PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9426_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HB-other | ||||||||
Protein Properties | Length: 75aa MW: 8347.39 Da PI: 7.7043 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.1 | 1.3e-07 | 3 | 33 | 25 | 55 |
--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRake 55 ++++e+ +L++ +gL++rq+ +WF N+R ++ cra_locus_9426_iso_4_len_569_ver_3 3 LQEDEKNKLSEITGLDQRQINNWFINQRKRH 33 578999**********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.252 | 1 | 36 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.02E-10 | 3 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 4 | 38 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-10 | 5 | 32 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 5.21E-8 | 5 | 37 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 11 | 34 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MILQEDEKNK LSEITGLDQR QINNWFINQR KRHWRPSEDM RFALMQGVTS TLAGPPMYFD 60 AAGGGPPGHG GGFGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00670 | PBM | Transfer from GRMZM2G087741 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022865089.1 | 3e-29 | homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | A2Y007 | 9e-22 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 9e-22 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A2G9GXR3 | 1e-27 | A0A2G9GXR3_9LAMI; Transcription factor MEIS1 | ||||
STRING | XP_009758508.1 | 8e-26 | (Nicotiana sylvestris) | ||||
STRING | XP_010267995.1 | 1e-25 | (Nelumbo nucifera) |