PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_94245_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 336aa    MW: 36106.7 Da    PI: 9.1473
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_94245_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.92.2e-08312335528
                                           CHHHCHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   5 krerrkqkNReAArrsRqRKkaei 28 
                                           +r+rr++kNRe+A rsR+RK+a++
  cra_locus_94245_iso_1_len_1006_ver_3 312 RRQRRMIKNRESAARSRARKQAYT 335
                                           79********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-7308335No hitNo description
CDDcd147076.76E-16312335No hitNo description
PROSITE patternPS000360315330IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010187Biological Processnegative regulation of seed germination
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
XQNTLCENGK NFGSMNMDEF LNSIWTAEEN QAQGSTAHPH PQPSPNPVVT PPVHLSLDHH  60
HHHDHNTSTS STTDHTKGAV ISKQPSLPGQ GSLTLPLPLS RKTVDEVWAE IHRTQQEQQQ  120
QQQPNNNNSN NNNSVQNPNS TTRQITFGEM TLEDFLVRAG VVREQCHPTP VVPHQQQSYV  180
SNFYQNNTQP AAIMGPGFVT RPVMSLAGPA VAPGGGGYHA MPQGGIGDVS VFGPTGSHNK  240
RTGYGGRMGN GSGGGFGPGM GVGSPVSPVS SDGMCANQVE AGNQYGMDIG GMRPGGGRKR  300
IIDGPIEKVV ERRQRRMIKN RESAARSRAR KQAYTV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00294DAPTransfer from AT2G36270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094355.11e-99protein ABSCISIC ACID-INSENSITIVE 5
RefseqXP_011094356.11e-99protein ABSCISIC ACID-INSENSITIVE 5
TrEMBLA0A3Q7ITE82e-97A0A3Q7ITE8_SOLLC; Uncharacterized protein
STRINGSolyc09g009490.2.14e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61552433