PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_941_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27328.9 Da PI: 5.1122 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.3e-09 | 93 | 140 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f+eL + l + + + +K +iL A++ +++L cra_locus_941_iso_5_len_1359_ver_3 93 TKACREKLRREKLNDKFSELCSTLEPG---RPARTDKLAILGDAIRVVNQL 140 6779**********************8...789**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.03E-12 | 81 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.51E-6 | 87 | 143 | No hit | No description |
PROSITE profile | PS50888 | 12.551 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-7 | 93 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-7 | 95 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-10 | 97 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDRGFIGDSS LTDNMNGSTW EDGIDLIDIN SFINDVALQN SNDPYSYWSN QDYSTGVEID 60 ASLSGAASLE KECAEVECPR KRGRAESCSR VGTKACREKL RREKLNDKFS ELCSTLEPGR 120 PARTDKLAIL GDAIRVVNQL KSEALEYKET NEKLLEEIKT LKAEKNELRE EKLKLKADKE 180 KMEQELKAIS VPPPGFMATH PAAYQSAMSK MPVFPGYSLV PMWQYMPSSA RDTSQDHKLR 240 PPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027165718.1 | 1e-128 | transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 7e-73 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A068TV75 | 1e-124 | A0A068TV75_COFCA; Uncharacterized protein | ||||
STRING | XP_009775135.1 | 2e-99 | (Nicotiana sylvestris) | ||||
STRING | XP_009609911.1 | 2e-99 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4762 | 21 | 32 |