PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_941_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 165aa MW: 18704.6 Da PI: 9.8187 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 14 | 61 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f+eL + l + + + +K +iL A++ +++L cra_locus_941_iso_3_len_2642_ver_3 14 TKACREKLRREKLNDKFSELCSTLEPG---RPARTDKLAILGDAIRVVNQL 61 6789**********************8...789**************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.63E-5 | 8 | 64 | No hit | No description |
PROSITE profile | PS50888 | 12.551 | 10 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 14 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-12 | 16 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-7 | 16 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 18 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MNRGRAESCS RVGTKACREK LRREKLNDKF SELCSTLEPG RPARTDKLAI LGDAIRVVNQ 60 LKSEALEYKE TNEKLLEEIK TLKAEKNELR EEKLKLKADK EKMEQELKAI SVPPPGFMAT 120 HPAAYQSAMS KMPVFPGYSL VPMWQYMPSS ARDTSQDHKL RPPAA |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027165718.1 | 5e-95 | transcription factor bHLH104-like | ||||
Swissprot | Q8L467 | 8e-69 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A068TV75 | 2e-92 | A0A068TV75_COFCA; Uncharacterized protein | ||||
STRING | XP_009775135.1 | 2e-84 | (Nicotiana sylvestris) | ||||
STRING | XP_009609911.1 | 2e-84 | (Nicotiana tomentosiformis) |