PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9362_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 229aa    MW: 24681.8 Da    PI: 5.3913
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9362_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.53.8e-101203655
                              G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                                         m+vkgLtl+h+kSHLQkYRl
  cra_locus_9362_iso_3_len_1393_ver_3  1 MGVKGLTLYHLKSHLQKYRL 20
                                         99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-9121IPR009057Homeodomain-like
PfamPF143793.6E-2664109IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGVKGLTLYH LKSHLQKYRL GKQSSKETTE NSKDASCVAE SQDTGSSTSA SSRMIAQDLN  60
DGYQVTEALR VQMEVQRRLH EQLEVQRRLQ LRIEAQSKYL QSILEKACKV LNDQALVSAG  120
LEVAREELSE LAIKVASDCQ GVASVPSLTD VAASMENTNA SSMPARIGDC SIESCLTTSN  180
ESPVSPLGGG SQAPAAMKKR SRPELGNVES LPLEGTMPQV DWVISNIGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027120093.11e-132protein PHR1-LIKE 3-like isoform X2
SwissprotQ8LAJ72e-81PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A068TU041e-129A0A068TU04_COFCA; Uncharacterized protein
STRINGXP_006420903.11e-119(Citrus clementina)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]