PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9362_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 394aa MW: 43054.8 Da PI: 7.2632

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9362_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.7e-34	131	185	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl cra_locus_9362_iso_2_len_1409_ver_3 131 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 185 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-33	128	186	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	128	188	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-17	130	187	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	131	186	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	133	184	IPR001005	SANT/Myb domain
Pfam	PF14379	8.3E-26	229	274	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
XLSLLPRGVF RLPFLQAHPV PSLPLPLHSP RLWKSLLTLQ GRPISVNSVF LQEFYTFQEK 60 KEQESLGCCQ FQVRKEMYSS ARLPIVQTLP LEGAAGTGGG EFHHHQHGPI MSLDGTNLPG 120 DACLVLTTDP KPRLRWTAEL HERFVDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL 180 QKYRLGKQSS KETTENSKDA SCVAESQDTG SSTSASSRMI AQDLNDGYQV TEALRVQMEV 240 QRRLHEQLEV QRRLQLRIEA QSKYLQSILE KACKVLNDQA LVSAGLEVAR EELSELAIKV 300 ASDCQGVASV PSLTDVAASM ENTNASSMPA RIGDCSIESC LTTSNESPVS PLGGGSQAPA 360 AMKKRSRPEL GNVESLPLEG TMPQVDWVIS NIGS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

XLSLLPRGVF RLPFLQAHPV PSLPLPLHSP RLWKSLLTLQ GRPISVNSVF LQEFYTFQEK  60
KEQESLGCCQ FQVRKEMYSS ARLPIVQTLP LEGAAGTGGG EFHHHQHGPI MSLDGTNLPG  120
DACLVLTTDP KPRLRWTAEL HERFVDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL  180
QKYRLGKQSS KETTENSKDA SCVAESQDTG SSTSASSRMI AQDLNDGYQV TEALRVQMEV  240
QRRLHEQLEV QRRLQLRIEA QSKYLQSILE KACKVLNDQA LVSAGLEVAR EELSELAIKV  300
ASDCQGVASV PSLTDVAASM ENTNASSMPA RIGDCSIESC LTTSNESPVS PLGGGSQAPA  360
AMKKRSRPEL GNVESLPLEG TMPQVDWVIS NIGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-19	131	187	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	131	187	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	131	187	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	131	187	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	131	187	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027120092.1	1e-178	protein PHR1-LIKE 3-like isoform X1
Swissprot	Q94A57	1e-128	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A068TU04	1e-177	A0A068TU04_COFCA; Uncharacterized protein
STRING	XP_006493809.1	1e-160	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]