PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9351_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

EIL

Protein Properties

Length: 279aa MW: 31791.1 Da PI: 4.5036

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9351_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	54.3	3.8e-17	2	114	214	353
HHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 214 ikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkk 288 ikhm+p++++ir+l+ qsk lqd+m+a++s+++++v+nqee++ + +++v++s + +++ eg++ cra_locus_9351_iso_1_len_922_ver_3 2 IKHMAPDFNRIRRLVKQSKILQDRMTARDSATWSKVINQEESLS--------Q--LAQRSVKISPSMEDEEEGTR 66 9*************************************9854........2..25667888888776666555 PP XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 289 eskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 s +krk s+ ++++ cq+ +++s+++ +f+dkns+ q+e cra_locus_9351_iso_1_len_922_ver_3 67 ISG---------------SEKRKC-MFVSEVIEDH-SLFACQNFMCPQSDVASGFEDKNSRIQHE 114 555...............456663.3334444444.579********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.3180.10	5.1E-16	2	48	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
Pfam	PF04873	4.7E-11	2	42	No hit	No description
SuperFamily	SSF116768	1.09E-13	2	44	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
XIKHMAPDFN RIRRLVKQSK ILQDRMTARD SATWSKVINQ EESLSQLAQR SVKISPSMED 60 EEEGTRISGS EKRKCMFVSE VIEDHSLFAC QNFMCPQSDV ASGFEDKNSR IQHEKTCAYR 120 PNNVDHFDAN YVTTMDLPMY ESMVITNEKL PQSDHWMDIS EDSNEANIAE IVQEINRILD 180 IPPYDHLFPA TPDCMDSEDT INHEANITQV LQEVNGNLEN YRNCCGGAYV FRNQLRLDPT 240 SGNRTNLNLN VSPLEEALGV GHENAPSAWD LAYFHQGDP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178