PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_930_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 649aa MW: 72651.3 Da PI: 6.8659 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.4e-09 | 422 | 459 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + cra_locus_930_iso_5_len_2193_ver_3 422 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 459 554459******************************88 PP | |||||||
2 | BELL | 112.9 | 1.7e-36 | 280 | 348 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+k+kLl++leeVd+rYk+y++q++ v+ sFe+vag g+ak+Y +lA+ka+SrhFrcL+d i++q+ cra_locus_930_iso_5_len_2193_ver_3 280 ELQKRKSKLLQMLEEVDRRYKHYCNQMRSVVCSFEEVAGNGAAKVYSALASKAMSRHFRCLRDGIVGQV 348 89****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.1E-52 | 221 | 346 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-43 | 227 | 344 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 400 | 463 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.56E-11 | 403 | 464 | No hit | No description |
SMART | SM00389 | 2.5E-9 | 403 | 467 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 404 | 470 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-28 | 406 | 469 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.7E-18 | 420 | 459 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
KYFAGDDVLR YNLRFRQQKL FSMPSPGGGE EEKTTRSTMV MTTGYNFSDV STAANNPNNM 60 VSQFQTFDSN THQEIYGLDM IGFSSKNNNL HHHQPPSTHH DSSSSVMWKE FFGKSGDGPS 120 SSSSKTTINH HHQPSDGFYH HHHQPPPDFS TTGGGVSEAA GWTHHDPCVF PCEGNDQSRP 180 ISSTHQGLSL TLGNTSNNLQ IFQQEGLFGK LSAAAQYHHH HHGQFEIRSS KYLNPAQELL 240 NEFCCLDTKQ NSQKTHNPQW HEDQENATKF QSLYSLDLLE LQKRKSKLLQ MLEEVDRRYK 300 HYCNQMRSVV CSFEEVAGNG AAKVYSALAS KAMSRHFRCL RDGIVGQVKA IKKALGEKDH 360 HTSTSSVAPG TTRGETPRLR LLDQTLRQQR AFQQMNMMES HPWRPQRGLP ERAVSVLRAW 420 LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL EENKEQENIG 480 SSDGTNSLDE INVSRHNHHQ DDQKPTADQL VRIDSECLSS IINNPEKNDT TTSKNQLQDQ 540 ELQGTFGRVT DTFGAIELDF SSYNQNLVGG SGGGGSVSLT LGLQQHGGGG GGGVSLAFSS 600 AASQNSLFYG REHIEDCPPS VQYSLLDNEG QNLPYRNLMG AQLLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 6e-16 | 409 | 467 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 6e-16 | 409 | 467 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 6e-16 | 409 | 466 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-16 | 409 | 466 | 1 | 58 | Homeobox protein Meis1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081497.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-141 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | F6HUM6 | 0.0 | F6HUM6_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g00200.t01 | 0.0 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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