PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_930_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 650aa MW: 72798.4 Da PI: 6.8659 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27 | 7.4e-09 | 423 | 460 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + cra_locus_930_iso_1_len_2196_ver_3 423 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 460 554459******************************88 PP | |||||||
2 | BELL | 112.9 | 1.7e-36 | 281 | 349 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+k+kLl++leeVd+rYk+y++q++ v+ sFe+vag g+ak+Y +lA+ka+SrhFrcL+d i++q+ cra_locus_930_iso_1_len_2196_ver_3 281 ELQKRKSKLLQMLEEVDRRYKHYCNQMRSVVCSFEEVAGNGAAKVYSALASKAMSRHFRCLRDGIVGQV 349 89****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.1E-52 | 222 | 347 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-43 | 228 | 345 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.115 | 401 | 464 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-9 | 404 | 468 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.60E-11 | 404 | 465 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-17 | 405 | 471 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-28 | 407 | 470 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.7E-18 | 421 | 460 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
FKYFAGDDVL RYNLRFRQQK LFSMPSPGGG EEEKTTRSTM VMTTGYNFSD VSTAANNPNN 60 MVSQFQTFDS NTHQEIYGLD MIGFSSKNNN LHHHQPPSTH HDSSSSVMWK EFFGKSGDGP 120 SSSSSKTTIN HHHQPSDGFY HHHHQPPPDF STTGGGVSEA AGWTHHDPCV FPCEGNDQSR 180 PISSTHQGLS LTLGNTSNNL QIFQQEGLFG KLSAAAQYHH HHHGQFEIRS SKYLNPAQEL 240 LNEFCCLDTK QNSQKTHNPQ WHEDQENATK FQSLYSLDLL ELQKRKSKLL QMLEEVDRRY 300 KHYCNQMRSV VCSFEEVAGN GAAKVYSALA SKAMSRHFRC LRDGIVGQVK AIKKALGEKD 360 HHTSTSSVAP GTTRGETPRL RLLDQTLRQQ RAFQQMNMME SHPWRPQRGL PERAVSVLRA 420 WLFEHFLHPY PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY LEENKEQENI 480 GSSDGTNSLD EINVSRHNHH QDDQKPTADQ LVRIDSECLS SIINNPEKND TTTSKNQLQD 540 QELQGTFGRV TDTFGAIELD FSSYNQNLVG GSGGGGSVSL TLGLQQHGGG GGGGVSLAFS 600 SAASQNSLFY GREHIEDCPP SVQYSLLDNE GQNLPYRNLM GAQLLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 6e-16 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 6e-16 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 6e-16 | 410 | 467 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-16 | 410 | 467 | 1 | 58 | Homeobox protein Meis1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081497.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-141 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | F6HUM6 | 0.0 | F6HUM6_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g00200.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5300 | 13 | 17 |
Publications ? help Back to Top | |||
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