PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9214_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 298aa MW: 34296.4 Da PI: 6.9769

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9214_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl cra_locus_9214_iso_1_len_1133_ver_3 14 KGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	59.4	8.1e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ cra_locus_9214_iso_1_len_1133_ver_3 67 RGNFTEEEDELIINLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.624	9	61	IPR017930	Myb domain
SMART	SM00717	1.0E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.44E-30	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.932	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.02E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK LHGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLNRG 120 IDPQTHLPLN NSTTTTSSNM TTTTKTLQFH HTLYSSVPIA MMKSKAAPDQ LDDSNNSVLS 180 EELINSEINL ELTISPPHHH QHYSYPQQQE TDTNGFKKKK KKQKLHDEEE EAEEPFYLNF 240 GTNVDDDHDD NENVCLCYLG LIQSNTTSIT SVCHCSRIST HNVNIDNMHK YHTPPLSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-29	14	116	7	108	B-MYB
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	224	KKKKKQKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022773827.1	4e-98	myb-related protein 308-like
Swissprot	P81393	3e-89	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A371EAZ8	4e-96	A0A371EAZ8_MUCPR; Transcription repressor MYB4
STRING	XP_007137818.1	3e-93	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]