PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9168_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family YABBY
Protein Properties Length: 197aa    MW: 21706.6 Da    PI: 9.1561
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9168_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY150.61.5e-46291763163
                                YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk 76 
                                           +s  +++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l           l++   l+ +  e++  ++ 
  cra_locus_9168_iso_2_len_1101_ver_3  29 QQSPDQHLCYVRCNFCNTVLAVGIPCKRLMDTVTVKCGHCSNLSF---------LTTRPPLQGQCLEHQPTTTT 93 
                                          5566789**********************************9755.........34444556667777777766 PP

                                YABBY  77 veeenlksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdish 149
                                          ++  ++    +k +s+s+s s      + d ++p+++p v++PPek+ r Psaynrf+keeiqrika+nP+i h
  cra_locus_9168_iso_2_len_1101_ver_3  94 HHVPSFCGDIKKGQSSSSSSS-----ASADPQSPKAQPfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPH 162
                                          666666555444444443333.....35566677777769********************************** PP

                                YABBY 150 reafsaaaknWahf 163
                                          reafsaaaknWa f
  cra_locus_9168_iso_2_len_1101_ver_3 163 REAFSAAAKNWARF 176
                                          ************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.9E-5633176IPR006780YABBY protein
SuperFamilySSF470951.19E-8121174IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-5130175IPR009071High mobility group box domain
CDDcd013904.53E-6137173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSSYSPSSLP SLQLGEKPTI SMDLVNQQQQ SPDQHLCYVR CNFCNTVLAV GIPCKRLMDT  60
VTVKCGHCSN LSFLTTRPPL QGQCLEHQPT TTTHHVPSFC GDIKKGQSSS SSSSASADPQ  120
SPKAQPFVVK PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARFIPNT  180
PGGSNSDPTR NIYNLQV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650015.13e-84PREDICTED: protein CRABS CLAW isoform X1
SwissprotQ8L9252e-65CRC_ARATH; Protein CRABS CLAW
TrEMBLB9REB69e-83B9REB6_RICCO; Protein CRABS CLAW, putative
STRINGXP_002512055.12e-83(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]