PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9168_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21074.9 Da PI: 9.1796 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 150.7 | 1.4e-46 | 29 | 176 | 3 | 163 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkv 77 +s +++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l l++ l+ + e++ ++ + cra_locus_9168_iso_1_len_807_ver_3 29 QQSPDQHLCYVRCNFCNTVLAVGIPCKRLMDTVTVKCGHCSNLSF---------LTTRPPLQGQCLEHQPTTTTH 94 5566789**********************************9755.........344445566677777777666 PP YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishre 151 + ++ +k +s+s+s s + d ++p+++p v++PPek+ r Psaynrf+keeiqrika+nP+i hre cra_locus_9168_iso_1_len_807_ver_3 95 HVPSFCGDIKKGQSSSSSSS-----ASADPQSPKAQPfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHRE 164 66666555444444443333.....35566677777769************************************ PP YABBY 152 afsaaaknWahf 163 afsaaaknWa f cra_locus_9168_iso_1_len_807_ver_3 165 AFSAAAKNWARF 176 **********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.5E-56 | 33 | 176 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.13E-8 | 121 | 174 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 130 | 175 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 4.17E-6 | 137 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSSYSPSSLP SLQLGEKPTI SMDLVNQQQQ SPDQHLCYVR CNFCNTVLAV GIPCKRLMDT 60 VTVKCGHCSN LSFLTTRPPL QGQCLEHQPT TTTHHVPSFC GDIKKGQSSS SSSSASADPQ 120 SPKAQPFVVK PPEKKHRLPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARFIPNT 180 PGGSNSDPTR NV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015886.1 | 3e-84 | protein CRABS CLAW | ||||
Swissprot | Q8L925 | 2e-65 | CRC_ARATH; Protein CRABS CLAW | ||||
TrEMBL | B9REB6 | 7e-83 | B9REB6_RICCO; Protein CRABS CLAW, putative | ||||
STRING | XP_002512055.1 | 1e-83 | (Ricinus communis) |
Publications ? help Back to Top | |||
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