PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_91445_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 16492.1 Da PI: 8.1228 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 1 | 92 | 9 | 100 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 rr+CakdCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++ cra_locus_91445_iso_1_len_443_ver_3 1 RRRCAKDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISS 74 79************************************************************************ PP DUF260 83 lqqqleqlkaelallkee 100 lqqq++ l+++lal+++e cra_locus_91445_iso_1_len_443_ver_3 75 LQQQIDFLQTQLALAQAE 92 *************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.2E-39 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 23.726 | 1 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
RRRCAKDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE LPEHQRGDAV SSMVYEANAR 60 VRDPVYGCVG AISSLQQQID FLQTQLALAQ AEVVQMRMRQ FSNNSHSHSH GAQTTNSSPE 120 HNINIASPNS STRHNTQSHL YTMGESLX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 1 | 95 | 19 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 1 | 95 | 19 | 113 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077308.1 | 6e-77 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 6e-56 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A068VA16 | 1e-75 | A0A068VA16_COFCA; Uncharacterized protein | ||||
STRING | XP_009603165.1 | 4e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |