PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9136_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 31972.7 Da PI: 6.5113 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.3e-16 | 17 | 64 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 g+W++eEd +l+d+++++G+g +W + + + g++R++k+c++rw++yl cra_locus_9136_iso_5_len_1067_ver_3 17 GPWSPEEDAKLKDYIEKHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.4 | 1.2e-11 | 71 | 113 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ cra_locus_9136_iso_5_len_1067_ver_3 71 GDFSDDEDRIICTLFSTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 113 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.331 | 11 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-11 | 15 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.3E-26 | 16 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 17 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-15 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-9 | 18 | 64 | No hit | No description |
PROSITE profile | PS51294 | 21.394 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-11 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-10 | 71 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-7 | 73 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
XXXXXXXXXX XXXXXXGPWS PEEDAKLKDY IEKHGTGGNW IALPLKAGLK RCGKSCRLRW 60 LNYLRPNIKH GDFSDDEDRI ICTLFSTIGS RWSIIAAQLP GRTDNDIKNY WNTKLKKKLM 120 GMSQKRSQNS ITPNSILLDH QSLSLTSSSS SLPYPTLSFT GYQNYSIPST NNPPSVVIQG 180 QEGNYMMNSS IHHYQDHNSF LRFGSEVAAA AAASSSSSDD GSSIFINRFE DDQQKPIINY 240 DQNPSLDCSL EEIKQLISTN LTFNNNFFLD EIKIEEDKFT YY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 17 | 119 | 8 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022888664.1 | 4e-85 | transcription factor RAX2 | ||||
TrEMBL | A0A2P6RB18 | 8e-80 | A0A2P6RB18_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004304464.1 | 2e-77 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |