PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_9136_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 31271 Da PI: 7.0839 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 12 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++++G+g +W + + + g++R++k+c++rw++yl cra_locus_9136_iso_2_len_1053_ver_3 12 KGPWSPEEDAKLKDYIEKHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 60 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.5 | 1.2e-11 | 67 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ cra_locus_9136_iso_2_len_1053_ver_3 67 GDFSDDEDRIICTLFSTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 109 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.62 | 7 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.28E-27 | 9 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-12 | 11 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 12 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 13 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-9 | 14 | 60 | No hit | No description |
PROSITE profile | PS51294 | 21.394 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-11 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-10 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-7 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
LAPCCDKANV KKGPWSPEED AKLKDYIEKH GTGGNWIALP LKAGLKRCGK SCRLRWLNYL 60 RPNIKHGDFS DDEDRIICTL FSTIGSRWSI IAAQLPGRTD NDIKNYWNTK LKKKLMGMSQ 120 KRSQNSITPN SILLDHQSLS LTSSSSSLPY PTLSFTGYQN YSIPSTNNPP SVVIQGQEGN 180 YMMNSSIHHY QDHNSFLRFG SEVAAAAASS SSSDDGSSIF INRFEDDQQK PIINYDQNPS 240 LDCSLEEIKQ LISTNLTFNN NFFLDEIKIE EDKFTYY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 12 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022888664.1 | 3e-94 | transcription factor RAX2 | ||||
TrEMBL | A0A2P6RB18 | 9e-90 | A0A2P6RB18_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004304464.1 | 3e-87 | (Fragaria vesca) |