PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_9088_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 344aa MW: 37407.5 Da PI: 4.7127 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.2 | 2e-36 | 24 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ cra_locus_9088_iso_1_len_1785_ver_3 24 FLTKTYQLVDDPAIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR------ 91 9*****************************************************************99...... PP TTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkks 102 weF++++F++g+k ll++i+r+k cra_locus_9088_iso_1_len_1785_ver_3 92 ---WEFANEYFRRGEKGLLRDIQRRKI 115 ...*********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.5E-59 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.25E-36 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-38 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.1E-20 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.5E-32 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MPVEQTGESP AGGGDSQRSL PTPFLTKTYQ LVDDPAIDDL ISWNEDGTTF IVWRPAEFAR 60 DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFANEYFR RGEKGLLRDI QRRKISPTAV 120 AAPAVQATTS AAVAVNAQAV TVAVPAAIRI ISPTNSGDEQ VLSSNSSPAA TATTTAIRAT 180 SCTTTPEILE ENERLRKENA QLNQELNRLR SLCGNIYNLM SSYAVNQPET SGGGSIGGAL 240 ELLSARLNTA EMECGDGSDG GGMKAELQED VCPRLFGVSI GAKRVRRNDD EEDTTTRQQG 300 SKEQVHPPQT SDVKSEPLDS GGTGSREEPS WLDIRMSCKS DGES |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-25 | 10 | 113 | 15 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 10 | 113 | 15 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 10 | 113 | 15 | 129 | Heat shock factor protein 1 |
5hdg_A | 6e-26 | 24 | 113 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 6e-26 | 24 | 113 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 6e-26 | 24 | 113 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 6e-26 | 24 | 113 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 6e-26 | 24 | 113 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083096.1 | 1e-154 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q9T0D3 | 1e-101 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A1S3XXH5 | 1e-138 | A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1 | ||||
TrEMBL | A0A1U7V7G9 | 1e-138 | A0A1U7V7G9_NICSY; heat stress transcription factor B-2b | ||||
STRING | XP_009760921.1 | 1e-139 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2182 | 24 | 60 |
Publications ? help Back to Top | |||
---|---|---|---|
|