PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_9032_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | TALE | ||||||||
Protein Properties | Length: 350aa MW: 39820.2 Da PI: 4.9405 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.7 | 4.5e-09 | 293 | 327 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+++gL+++q+ +WF N+R ++ cra_locus_9032_iso_4_len_1508_ver_3 293 KWPYPTEADKISLAESTGLDQKQINNWFINQRKRH 327 679*****************************885 PP | |||||||
2 | ELK | 31.9 | 3e-11 | 247 | 268 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKY+ +++sLk EFs cra_locus_9032_iso_4_len_1508_ver_3 247 ELKERLLRKYGNHISSLKLEFS 268 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-13 | 115 | 157 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.6E-16 | 116 | 145 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.8E-24 | 166 | 217 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-22 | 170 | 215 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.458 | 247 | 267 | IPR005539 | ELK domain |
SMART | SM01188 | 5.8E-6 | 247 | 268 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.4E-7 | 247 | 268 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.811 | 267 | 330 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-19 | 268 | 342 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-13 | 269 | 334 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 272 | 331 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.90E-13 | 279 | 331 | No hit | No description |
Pfam | PF05920 | 1.0E-17 | 287 | 326 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 305 | 328 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDEMYGLHTT GDYADKALMS PENLMMIMPS DYDSYHGGGG LINSSSSGGG ADHHHNRIPM 60 FGSDDNIGTG GFQCSGISET ASITPHEIHH HHQRKIIYNN EDYEEHEDHH EDSCSAIKAK 120 IASHPSYPKL IDAYIDCQKV GAPPEKLLFW MRSEEKNEFC RQDVGSTTCL GADPELDEFM 180 ETYCDILVKY KSDLSRPFDE ARTFLNNIEL QLGTLSRDDG GVSSEDDFSG GETEVQDDGQ 240 MKGEDSELKE RLLRKYGNHI SSLKLEFSKK KKKGKLPKEA RQILLEWWSV HYKWPYPTEA 300 DKISLAESTG LDQKQINNWF INQRKRHWKP SENMQLAVMD NLSGQFFPDE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027150726.1 | 1e-150 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-124 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | D7TDJ7 | 1e-137 | D7TDJ7_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0127g00210.t01 | 1e-137 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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