PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_898_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YA | ||||||||
Protein Properties | Length: 207aa MW: 22906.8 Da PI: 8.2239 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.8e-32 | 112 | 168 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF cra_locus_898_iso_5_len_1821_ver_3 112 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 168 69***************************9.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.8E-36 | 110 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.559 | 111 | 171 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.9E-27 | 113 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.0E-24 | 114 | 136 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 116 | 136 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.0E-24 | 145 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MXXTARDCDN DEADEQLSHS ESQIQSPCQV TGMSHPSVTA PGMQYVAPPQ LXPANSLAQA 60 AYPYPDPYYR SIFAPYDAQP YPAQPYPAPP MVHLQLMGIQ QAGVPLPSDA VEEPVFVNAK 120 QYHGILRRRQ SRAKAESENK ALKSRKPYLH ESRHLHALRR ARGTGGRFLN AKKGENKPKD 180 AESGDKPQSN INLNAEKNDH LPSENAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 111 | 172 | 1 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087816.1 | 1e-115 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_027184808.1 | 1e-115 | nuclear transcription factor Y subunit A-7-like | ||||
Swissprot | Q84JP1 | 8e-61 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A068V9V1 | 1e-113 | A0A068V9V1_COFCA; Uncharacterized protein | ||||
STRING | VIT_10s0003g04650.t01 | 1e-100 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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