PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8887_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22378.3 Da PI: 9.3543 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.4 | 5.8e-07 | 55 | 99 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l ++ +++ ++ + ++Ia ++ ++t ++ +r cra_locus_8887_iso_3_len_1630_ver_3 55 DWTPEEQAILEEGLAKYSSEssivRYAKIAMHLD-NKTIRDVALRC 99 7*********************************.99999998885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.3E-4 | 52 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-6 | 54 | 100 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.43E-6 | 55 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.50E-6 | 56 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-5 | 56 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MDYFCPAEFS CSSASSPSSS AGVVSYNVKA PVSGIFDTSA SAVKFQPNLH GISMDWTPEE 60 QAILEEGLAK YSSESSIVRY AKIAMHLDNK TIRDVALRCR WLSKRDVSKR RKEDINLTRK 120 SKDRKDKILD PSAMASNAGM QSGFPSYAQM LKNDNGISYN AISGITWQLL RQNAQTFEQI 180 STNLAAHQVN YHFRFPFSFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 125 | RKSKDRKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272798.1 | 7e-61 | PREDICTED: uncharacterized protein LOC100257710 | ||||
TrEMBL | F6GX47 | 2e-59 | F6GX47_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0226g00040.t01 | 3e-60 | (Vitis vinifera) |