PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8845_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 846aa MW: 92986.6 Da PI: 6.8393

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8845_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.8e-18	268	368	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvk 70 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G + cra_locus_8845_iso_3_len_2916_ver_3 268 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQ 340 99************************555567778***********99899999999.**** PP HHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 71 angLkegDfvvFkldgrsefelvvkvfrk 99 + +L++gD+v+F++++ e++l+++++++ cra_locus_8845_iso_3_len_2916_ver_3 341 SMQLQAGDTVTFSRMD-PEGKLLMGFRKA 368 ***********876.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-29	260	368	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.88E-19	265	367	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.75E-22	266	367	No hit	No description
SMART	SM01019	1.9E-20	268	369	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	268	369	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-16	268	368	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.601	530	580	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.2E-13	535	577	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
XRECKSCGKL LHCGCIASIS LLELLDSGGV KCISCSKSHG LCSTSSREKC KDSGVSAANG 60 VDEKRFSNVG NQSSISLINK MKFAECCDDA GSDDHTLLPP SQMDDAIETI NQMKAEETFH 120 PAGEFGSSFL SFSGQSSIQS TQKVKPSQYM ENVHGSPVRT NLTISLSATS GNTDALPTAG 180 VEERQLGRKI SSFQQGSKSR HLLPKPPKSI LAAGLETNAS TTSQIRVARP PVEGRIKNQL 240 LPRYWPRITD QELQQISGDS NSTVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP 300 EGLPLRIQDV KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK 360 LLMGFRKASN ALMVQDKHLP SMPNGAFSSE PFFLPVNENL HAVNSHSGFL QSFKGRDFPL 420 SALSKHFNGG DFGWPLSESN VGKTVDGPMS PSTLVPERKR SRNIGSKNKR LLIDSQDALE 480 VKLSWEELQD MLRPPSGIEP STVTIEDFEL EEYEQAPVLG KKSIFTVLQS GEQEQWVQCD 540 SCLKWRRLPA DVLLPPKWTC QDNTWNLNRA SCSVPDELSP QELENLLQMS KELEKKRLGA 600 GLRSGNVHES SNPDALGNST AIGGNISEVG GTSVATTTKH PRHRPGCSCI VCIQPPSGKG 660 KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRN QFVWERKEEG EAESIGMQLA 720 TPIDSLEDQR RLGSELQIIS QNNTQSVEIG NNGKLDLNSH PDRENLQMKS SRISMVSLLQ 780 EASLPLETYL KQNGLTSLVS DQQASSGSHV LQPANRDSEN LSHGVQEPED GSEELSETDQ 840 SGKDPS

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

XRECKSCGKL LHCGCIASIS LLELLDSGGV KCISCSKSHG LCSTSSREKC KDSGVSAANG  60
VDEKRFSNVG NQSSISLINK MKFAECCDDA GSDDHTLLPP SQMDDAIETI NQMKAEETFH  120
PAGEFGSSFL SFSGQSSIQS TQKVKPSQYM ENVHGSPVRT NLTISLSATS GNTDALPTAG  180
VEERQLGRKI SSFQQGSKSR HLLPKPPKSI LAAGLETNAS TTSQIRVARP PVEGRIKNQL  240
LPRYWPRITD QELQQISGDS NSTVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP  300
EGLPLRIQDV KGKEWVFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRMDPEGK  360
LLMGFRKASN ALMVQDKHLP SMPNGAFSSE PFFLPVNENL HAVNSHSGFL QSFKGRDFPL  420
SALSKHFNGG DFGWPLSESN VGKTVDGPMS PSTLVPERKR SRNIGSKNKR LLIDSQDALE  480
VKLSWEELQD MLRPPSGIEP STVTIEDFEL EEYEQAPVLG KKSIFTVLQS GEQEQWVQCD  540
SCLKWRRLPA DVLLPPKWTC QDNTWNLNRA SCSVPDELSP QELENLLQMS KELEKKRLGA  600
GLRSGNVHES SNPDALGNST AIGGNISEVG GTSVATTTKH PRHRPGCSCI VCIQPPSGKG  660
KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRN QFVWERKEEG EAESIGMQLA  720
TPIDSLEDQR RLGSELQIIS QNNTQSVEIG NNGKLDLNSH PDRENLQMKS SRISMVSLLQ  780
EASLPLETYL KQNGLTSLVS DQQASSGSHV LQPANRDSEN LSHGVQEPED GSEELSETDQ  840
SGKDPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-69	246	371	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	674	685	KRRFKTLMMRKK
2	674	687	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027069389.1	0.0	B3 domain-containing transcription repressor VAL2-like isoform X2
TrEMBL	A0A068UCW0	0.0	A0A068UCW0_COFCA; Uncharacterized protein
STRING	XP_009768196.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1491	23	65