PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_88435_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 448aa    MW: 49300.8 Da    PI: 6.2291
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_88435_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.73.2e-112864453374
                                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknss 75 
                                            lLl+cAe+v+ ++l+ a++lL ++ el+sp g++ +R+aayf+ AL++r+ +s  ++y+ l+ ++ ++++s+
  cra_locus_88435_iso_1_len_1490_ver_3  86 GLLLQCAECVDMDNLHDASNLLPEIAELSSPFGSSAERVAAYFADALSTRIISSYLGTYSPLTLKSLTKSHSQ 158
                                           58*********************************************************************** PP

                                  GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                                           + ++al+ ++ +sP++kfs+ taNqaI +a++ge++vH+iD+di+qGlQWp L++ LasRp++  sl++Tg+g
  cra_locus_88435_iso_1_len_1490_ver_3 159 KLFNALQSYNSISPLIKFSQYTANQAIFQALHGEDHVHVIDLDIMQGLQWPGLFHILASRPRKIRSLKVTGFG 231
                                           ************************************************************************* PP

                                  GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221
                                           s    s e le+tg+rLa+fA++lg+pfe+n++  k  +  ++ +L v  gEa++V+++   h l+d ++s  
  cra_locus_88435_iso_1_len_1490_ver_3 232 S----SIELLESTGRRLAEFASSLGLPFEYNPIEGKIGNFKDMGQLGVMAGEAIVVHWMQ--HCLYDITGSDL 298
                                           *....9**************************75554455589****************9..88887788888 PP

                                  GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                           s    +L+l+  l+Pk++++veq+++h +++Fl rf+eal+yysalfd+l  +l+ +s er++vE++l++ ei
  cra_locus_88435_iso_1_len_1490_ver_3 299 S----TLRLLTLLRPKLITIVEQDLSH-GGNFLGRFVEALHYYSALFDALGDGLGVDSLERHTVEQQLFAGEI 366
                                           8....**********************.789****************************************** PP

                                  GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                                           +n+va  g +r+ + + +e+W e l++ GF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L
  cra_locus_88435_iso_1_len_1490_ver_3 367 RNIVAVGGPKRTGEVK-VERWGEELRRIGFRPVSLAGSPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSL 438
                                           **********998887.9******************************************************* PP

                                  GRAS 368 vsvSaWr 374
                                           +++SaW+
  cra_locus_88435_iso_1_len_1490_ver_3 439 LTASAWQ 445
                                           ******6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.5958425IPR005202Transcription factor GRAS
PfamPF035141.1E-10986445IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
XIFMQSKRPA SSELHLHHHQ VDIDLPSSSS TSLFKRHRTS SPTAHLPSIS GEKTTDENDQ  60
EDADPQTNLP PVVHVDTEST GLRLLGLLLQ CAECVDMDNL HDASNLLPEI AELSSPFGSS  120
AERVAAYFAD ALSTRIISSY LGTYSPLTLK SLTKSHSQKL FNALQSYNSI SPLIKFSQYT  180
ANQAIFQALH GEDHVHVIDL DIMQGLQWPG LFHILASRPR KIRSLKVTGF GSSIELLEST  240
GRRLAEFASS LGLPFEYNPI EGKIGNFKDM GQLGVMAGEA IVVHWMQHCL YDITGSDLST  300
LRLLTLLRPK LITIVEQDLS HGGNFLGRFV EALHYYSALF DALGDGLGVD SLERHTVEQQ  360
LFAGEIRNIV AVGGPKRTGE VKVERWGEEL RRIGFRPVSL AGSPAAQASL LLGMFPWKGY  420
TLVEENGCLK LGWKDLSLLT ASAWQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1619044625380Protein SCARECROW
5b3h_A1e-1619044624379Protein SCARECROW
5b3h_D1e-1619044624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062259.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A068V5H20.0A0A068V5H2_COFCA; Uncharacterized protein
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]