PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_88435_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 448aa MW: 49300.8 Da PI: 6.2291 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.7 | 3.2e-112 | 86 | 445 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknss 75 lLl+cAe+v+ ++l+ a++lL ++ el+sp g++ +R+aayf+ AL++r+ +s ++y+ l+ ++ ++++s+ cra_locus_88435_iso_1_len_1490_ver_3 86 GLLLQCAECVDMDNLHDASNLLPEIAELSSPFGSSAERVAAYFADALSTRIISSYLGTYSPLTLKSLTKSHSQ 158 58*********************************************************************** PP GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148 + ++al+ ++ +sP++kfs+ taNqaI +a++ge++vH+iD+di+qGlQWp L++ LasRp++ sl++Tg+g cra_locus_88435_iso_1_len_1490_ver_3 159 KLFNALQSYNSISPLIKFSQYTANQAIFQALHGEDHVHVIDLDIMQGLQWPGLFHILASRPRKIRSLKVTGFG 231 ************************************************************************* PP GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 s s e le+tg+rLa+fA++lg+pfe+n++ k + ++ +L v gEa++V+++ h l+d ++s cra_locus_88435_iso_1_len_1490_ver_3 232 S----SIELLESTGRRLAEFASSLGLPFEYNPIEGKIGNFKDMGQLGVMAGEAIVVHWMQ--HCLYDITGSDL 298 *....9**************************75554455589****************9..88887788888 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 s +L+l+ l+Pk++++veq+++h +++Fl rf+eal+yysalfd+l +l+ +s er++vE++l++ ei cra_locus_88435_iso_1_len_1490_ver_3 299 S----TLRLLTLLRPKLITIVEQDLSH-GGNFLGRFVEALHYYSALFDALGDGLGVDSLERHTVEQQLFAGEI 366 8....**********************.789****************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +n+va g +r+ + + +e+W e l++ GF+pv+l + a+qa+lll +++++gy++ ee+g+l lgWkd +L cra_locus_88435_iso_1_len_1490_ver_3 367 RNIVAVGGPKRTGEVK-VERWGEELRRIGFRPVSLAGSPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSL 438 **********998887.9******************************************************* PP GRAS 368 vsvSaWr 374 +++SaW+ cra_locus_88435_iso_1_len_1490_ver_3 439 LTASAWQ 445 ******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.59 | 58 | 425 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-109 | 86 | 445 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
XIFMQSKRPA SSELHLHHHQ VDIDLPSSSS TSLFKRHRTS SPTAHLPSIS GEKTTDENDQ 60 EDADPQTNLP PVVHVDTEST GLRLLGLLLQ CAECVDMDNL HDASNLLPEI AELSSPFGSS 120 AERVAAYFAD ALSTRIISSY LGTYSPLTLK SLTKSHSQKL FNALQSYNSI SPLIKFSQYT 180 ANQAIFQALH GEDHVHVIDL DIMQGLQWPG LFHILASRPR KIRSLKVTGF GSSIELLEST 240 GRRLAEFASS LGLPFEYNPI EGKIGNFKDM GQLGVMAGEA IVVHWMQHCL YDITGSDLST 300 LRLLTLLRPK LITIVEQDLS HGGNFLGRFV EALHYYSALF DALGDGLGVD SLERHTVEQQ 360 LFAGEIRNIV AVGGPKRTGE VKVERWGEEL RRIGFRPVSL AGSPAAQASL LLGMFPWKGY 420 TLVEENGCLK LGWKDLSLLT ASAWQPSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-161 | 90 | 446 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-161 | 90 | 446 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-161 | 90 | 446 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062259.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 0.0 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A068V5H2 | 0.0 | A0A068V5H2_COFCA; Uncharacterized protein | ||||
STRING | EOX93173 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10745 | 21 | 26 |
Publications ? help Back to Top | |||
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