PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8822_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YC

Protein Properties

Length: 314aa MW: 35123.9 Da PI: 4.8353

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8822_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.1	3.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v++ ++fdfl cra_locus_8822_iso_1_len_1495_ver_3 6 DTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEVTLMRGAKTMNSLHLKQCVQSFNVFDFLR 81 5789************************************************************************ PP NF-YC 94 divpr 98 +iv r cra_locus_8822_iso_1_len_1495_ver_3 82 EIVSR 86 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.0E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	8.1E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEVTLMRGAK 60 TMNSLHLKQC VQSFNVFDFL REIVSRVPDL GGSESAGEGP VHKKRKVAVG EDNASDEEYK 120 NSHVHEAGYT SSSGRGRGRG RGRGRGRGSR TGSIQYGRFE DDPDVSEQTN HEKSINLENG 180 ANPGDSNRSC VVKNSDVAVQ SFDLNVDLNE NGDLTVLSSE ITCNTFAKPP VETKREEYPG 240 WSLADMKSMA IDPIELGKLN ERIEEEEDDY DEEGSXYPIR MLLVVGNMFQ QVGFSYSEQV 300 VLTESSWDYR KETV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	8e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	146	RGRGRGRGRGR
2	138	147	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179024.1	1e-113	dr1-associated corepressor-like isoform X1
Refseq	XP_027179032.1	1e-113	dr1-associated corepressor-like isoform X1
Refseq	XP_027179037.1	1e-113	dr1-associated corepressor-like isoform X1
TrEMBL	A0A068UMH5	1e-110	A0A068UMH5_COFCA; Uncharacterized protein
STRING	EOY32947	6e-91	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29