PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8807_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 1002aa MW: 110580 Da PI: 5.449

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8807_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ cra_locus_8807_iso_7_len_4421_ver_3 595 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	585	666	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	598	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-23	897	985	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.0E-23	900	981	No hit	No description
PROSITE profile	PS51745	22.763	902	984	IPR000270	PB1 domain
SMART	SM00666	1.8E-21	902	984	IPR000270	PB1 domain
Pfam	PF00564	4.7E-17	903	983	IPR000270	PB1 domain
CDD	cd06407	7.03E-30	903	983	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MEYPFPSKER VGGGSWASPR AQMDCGSSWD GCSRPASLED SFQELLTFDG YAGWCHSPNA 60 TTDQMFASCA SSPLNSCYAP FDGLNFGEQS TEAAFHGINS EIVQNCFNDQ DKVMYFEELG 120 TRSNSSTRCL EEVDQAVKKG KGCRQQNTTI DAGNSMVPRS PSQPLAEKML RALSLFKESA 180 GEGILAQVWV PVRTGEHYIL STSEQPYLLD HVLSGYREVS RAFTFGAEVK SGSFLGLPGR 240 VFASRIPEWT SNVLYYNRAE YLRVHHARDH EVRGSIALPV FNGDPLDLSC CAVLELVTVK 300 EKVNFDLEME NVCQALKAVN LRSTAPPRLY PECLSNNQRA ALAEITDVLR AVCHAHRLPL 360 ALTWIPCIYA EGVGDEVIRV RVRGCTTGSS ERCILCVEDT ACYVNDRDME GFIHACMEHY 420 LEEGQGIVGK ALQSNHPFFF PDVKEYNISE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY 480 ILEFFLPISM SGSAEQQLLL NNLSSTMQRI CRSLRTVSDS ELITGEDSRV EFPDELNLKG 540 PPVALSRKLR SNSNIDNEVL MNLSNPENAQ MEDKVCPDQI IRGTKRQLEK KRSTAEKNVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL RKIQSVLDSV 660 QGVEGGLKFD PSTGELVTTG SITQDPQIQK GVLPGKNSVG DPISVIQDIG STSPAHCMVN 720 ENAVVKMEEE CYLDNKDVGK LSFPSPNSSK EKYQQKMPGA EGCPIPELAA PGSVSSRSAT 780 LKTMHWSYFD HKSLDSYLSR SGQKEWGLTG KSQNLESCDS VFVSQSSSSV GVIDERDAKE 840 KNSYVLDGDD GVLEQSHPTS SSMTDSSNGS GSMMNGSSSC SRSFAKQKHS KDEASFEECG 900 SKITVKASYK DDTVRFKFDP SFGCFNLYEE VARRFKLQQG TFQLKYMDDE EEWVMLVSDS 960 DLQECLEILD ILGTRSVKFL VRDALCAVGS SGSSNCFLGG GS

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MEYPFPSKER VGGGSWASPR AQMDCGSSWD GCSRPASLED SFQELLTFDG YAGWCHSPNA  60
TTDQMFASCA SSPLNSCYAP FDGLNFGEQS TEAAFHGINS EIVQNCFNDQ DKVMYFEELG  120
TRSNSSTRCL EEVDQAVKKG KGCRQQNTTI DAGNSMVPRS PSQPLAEKML RALSLFKESA  180
GEGILAQVWV PVRTGEHYIL STSEQPYLLD HVLSGYREVS RAFTFGAEVK SGSFLGLPGR  240
VFASRIPEWT SNVLYYNRAE YLRVHHARDH EVRGSIALPV FNGDPLDLSC CAVLELVTVK  300
EKVNFDLEME NVCQALKAVN LRSTAPPRLY PECLSNNQRA ALAEITDVLR AVCHAHRLPL  360
ALTWIPCIYA EGVGDEVIRV RVRGCTTGSS ERCILCVEDT ACYVNDRDME GFIHACMEHY  420
LEEGQGIVGK ALQSNHPFFF PDVKEYNISE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY  480
ILEFFLPISM SGSAEQQLLL NNLSSTMQRI CRSLRTVSDS ELITGEDSRV EFPDELNLKG  540
PPVALSRKLR SNSNIDNEVL MNLSNPENAQ MEDKVCPDQI IRGTKRQLEK KRSTAEKNVS  600
LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL RKIQSVLDSV  660
QGVEGGLKFD PSTGELVTTG SITQDPQIQK GVLPGKNSVG DPISVIQDIG STSPAHCMVN  720
ENAVVKMEEE CYLDNKDVGK LSFPSPNSSK EKYQQKMPGA EGCPIPELAA PGSVSSRSAT  780
LKTMHWSYFD HKSLDSYLSR SGQKEWGLTG KSQNLESCDS VFVSQSSSSV GVIDERDAKE  840
KNSYVLDGDD GVLEQSHPTS SSMTDSSNGS GSMMNGSSSC SRSFAKQKHS KDEASFEECG  900
SKITVKASYK DDTVRFKFDP SFGCFNLYEE VARRFKLQQG TFQLKYMDDE EEWVMLVSDS  960
DLQECLEILD ILGTRSVKFL VRDALCAVGS SGSSNCFLGG GS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027166952.1	0.0	protein NLP9-like isoform X1
Refseq	XP_027166953.1	0.0	protein NLP9-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A068U4F8	0.0	A0A068U4F8_COFCA; Uncharacterized protein
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]