PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8807_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 639aa MW: 71048.4 Da PI: 5.3288

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8807_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	22.9	1.7e-07	595	620	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek++sl++l++yFs+++kdAAk++g cra_locus_8807_iso_6_len_2618_ver_3 595 AEKNVSLSVLQQYFSGSLKDAAKSIG 620 589*********************98 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MEYPFPSKER VGGGSWASPR AQMDCGSSWD GCSRPASLED SFQELLTFDG YAGWCHSPNA 60 TTDQMFASCA SSPLNSCYAP FDGLNFGEQS TEAAFHGINS EIVQNCFNDQ DKVMYFEELG 120 TRSNSSTRCL EEVDQAVKKG KGCRQQNTTI DAGNSMVPRS PSQPLAEKML RALSLFKESA 180 GEGILAQVWV PVRTGEHYIL STSEQPYLLD HVLSGYREVS RAFTFGAEVK SGSFLGLPGR 240 VFASRIPEWT SNVLYYNRAE YLRVHHARDH EVRGSIALPV FNGDPLDLSC CAVLELVTVK 300 EKVNFDLEME NVCQALKAVN LRSTAPPRLY PECLSNNQRA ALAEITDVLR AVCHAHRLPL 360 ALTWIPCIYA EGVGDEVIRV RVRGCTTGSS ERCILCVEDT ACYVNDRDME GFIHACMEHY 420 LEEGQGIVGK ALQSNHPFFF PDVKEYNISE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY 480 ILEFFLPISM SGSAEQQLLL NNLSSTMQRI CRSLRTVSDS ELITGEDSRV EFPDELNLKG 540 PPVALSRKLR SNSNIDNEVL MNLSNPENAQ MEDKVCPDQI IRGTKRQLEK KRSTAEKNVS 600 LSVLQQYFSG SLKDAAKSIG GETSLALMLF LKKLIDYSL

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MEYPFPSKER VGGGSWASPR AQMDCGSSWD GCSRPASLED SFQELLTFDG YAGWCHSPNA  60
TTDQMFASCA SSPLNSCYAP FDGLNFGEQS TEAAFHGINS EIVQNCFNDQ DKVMYFEELG  120
TRSNSSTRCL EEVDQAVKKG KGCRQQNTTI DAGNSMVPRS PSQPLAEKML RALSLFKESA  180
GEGILAQVWV PVRTGEHYIL STSEQPYLLD HVLSGYREVS RAFTFGAEVK SGSFLGLPGR  240
VFASRIPEWT SNVLYYNRAE YLRVHHARDH EVRGSIALPV FNGDPLDLSC CAVLELVTVK  300
EKVNFDLEME NVCQALKAVN LRSTAPPRLY PECLSNNQRA ALAEITDVLR AVCHAHRLPL  360
ALTWIPCIYA EGVGDEVIRV RVRGCTTGSS ERCILCVEDT ACYVNDRDME GFIHACMEHY  420
LEEGQGIVGK ALQSNHPFFF PDVKEYNISE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY  480
ILEFFLPISM SGSAEQQLLL NNLSSTMQRI CRSLRTVSDS ELITGEDSRV EFPDELNLKG  540
PPVALSRKLR SNSNIDNEVL MNLSNPENAQ MEDKVCPDQI IRGTKRQLEK KRSTAEKNVS  600
LSVLQQYFSG SLKDAAKSIG GETSLALMLF LKKLIDYSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027166952.1	0.0	protein NLP9-like isoform X1
Refseq	XP_027166953.1	0.0	protein NLP9-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A068U4F8	0.0	A0A068U4F8_COFCA; Uncharacterized protein
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]