PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8807_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Nin-like | ||||||||
Protein Properties | Length: 1002aa MW: 110580 Da PI: 5.449 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.7 | 2.7e-29 | 595 | 646 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ cra_locus_8807_iso_3_len_4290_ver_3 595 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.824 | 585 | 666 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.6E-26 | 598 | 646 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.29E-23 | 897 | 985 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.0E-23 | 900 | 981 | No hit | No description |
PROSITE profile | PS51745 | 22.763 | 902 | 984 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.8E-21 | 902 | 984 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.7E-17 | 903 | 983 | IPR000270 | PB1 domain |
CDD | cd06407 | 7.03E-30 | 903 | 983 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1002 aa Download sequence Send to blast |
MEYPFPSKER VGGGSWASPR AQMDCGSSWD GCSRPASLED SFQELLTFDG YAGWCHSPNA 60 TTDQMFASCA SSPLNSCYAP FDGLNFGEQS TEAAFHGINS EIVQNCFNDQ DKVMYFEELG 120 TRSNSSTRCL EEVDQAVKKG KGCRQQNTTI DAGNSMVPRS PSQPLAEKML RALSLFKESA 180 GEGILAQVWV PVRTGEHYIL STSEQPYLLD HVLSGYREVS RAFTFGAEVK SGSFLGLPGR 240 VFASRIPEWT SNVLYYNRAE YLRVHHARDH EVRGSIALPV FNGDPLDLSC CAVLELVTVK 300 EKVNFDLEME NVCQALKAVN LRSTAPPRLY PECLSNNQRA ALAEITDVLR AVCHAHRLPL 360 ALTWIPCIYA EGVGDEVIRV RVRGCTTGSS ERCILCVEDT ACYVNDRDME GFIHACMEHY 420 LEEGQGIVGK ALQSNHPFFF PDVKEYNISE YPLVHHARKF GLNAAVAIRL RSTYTGDDDY 480 ILEFFLPISM SGSAEQQLLL NNLSSTMQRI CRSLRTVSDS ELITGEDSRV EFPDELNLKG 540 PPVALSRKLR SNSNIDNEVL MNLSNPENAQ MEDKVCPDQI IRGTKRQLEK KRSTAEKNVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL RKIQSVLDSV 660 QGVEGGLKFD PSTGELVTTG SITQDPQIQK GVLPGKNSVG DPISVIQDIG STSPAHCMVN 720 ENAVVKMEEE CYLDNKDVGK LSFPSPNSSK EKYQQKMPGA EGCPIPELAA PGSVSSRSAT 780 LKTMHWSYFD HKSLDSYLSR SGQKEWGLTG KSQNLESCDS VFVSQSSSSV GVIDERDAKE 840 KNSYVLDGDD GVLEQSHPTS SSMTDSSNGS GSMMNGSSSC SRSFAKQKHS KDEASFEECG 900 SKITVKASYK DDTVRFKFDP SFGCFNLYEE VARRFKLQQG TFQLKYMDDE EEWVMLVSDS 960 DLQECLEILD ILGTRSVKFL VRDALCAVGS SGSSNCFLGG GS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027166952.1 | 0.0 | protein NLP9-like isoform X1 | ||||
Refseq | XP_027166953.1 | 0.0 | protein NLP9-like isoform X1 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A068U4F8 | 0.0 | A0A068U4F8_COFCA; Uncharacterized protein | ||||
STRING | XP_009795771.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3981 | 24 | 45 |
Publications ? help Back to Top | |||
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