PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8807_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 406aa MW: 44210.5 Da PI: 6.2643

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8807_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	1	50	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ cra_locus_8807_iso_2_len_2342_ver_3 1 KNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 50 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.802	1	70	IPR003035	RWP-RK domain
Pfam	PF02042	8.3E-27	2	50	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.68E-23	300	389	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.8E-24	304	385	No hit	No description
PROSITE profile	PS51745	22.763	306	388	IPR000270	PB1 domain
SMART	SM00666	1.8E-21	306	388	IPR000270	PB1 domain
Pfam	PF00564	1.3E-17	307	387	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQSV 60 LDSVQGVEGG LKFDPSTGEL VTTGSITQDP QIQKGVLPGK NSVGDPISVI QDIGSTSPAH 120 CMVNENAVVK MEEECYLDNK DVGKLSFPSP NSSKEKYQQK MPGAEGCPIP ELAAPGSVSS 180 RSATLKTMHW SYFDHKSLDS YLSRSGQKEW GLTGKSQNLE SCDSVFVSQS SSSVGVIDER 240 DAKEKNSYVL DGDDGVLEQS HPTSSSMTDS SNGSGSMMNG SSSCSRSFAK QKHSKDEASF 300 EECGSKITVK ASYKDDTVRF KFDPSFGCFN LYEEVARRFK LQQGTFQLKY MDDEEEWVML 360 VSDSDLQECL EILDILGTRS VKFLVRDALC AVGSSGSSNC FLGGGS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQSV  60
LDSVQGVEGG LKFDPSTGEL VTTGSITQDP QIQKGVLPGK NSVGDPISVI QDIGSTSPAH  120
CMVNENAVVK MEEECYLDNK DVGKLSFPSP NSSKEKYQQK MPGAEGCPIP ELAAPGSVSS  180
RSATLKTMHW SYFDHKSLDS YLSRSGQKEW GLTGKSQNLE SCDSVFVSQS SSSVGVIDER  240
DAKEKNSYVL DGDDGVLEQS HPTSSSMTDS SNGSGSMMNG SSSCSRSFAK QKHSKDEASF  300
EECGSKITVK ASYKDDTVRF KFDPSFGCFN LYEEVARRFK LQQGTFQLKY MDDEEEWVML  360
VSDSDLQECL EILDILGTRS VKFLVRDALC AVGSSGSSNC FLGGGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016511290.1	1e-142	PREDICTED: protein NLP9-like, partial
Refseq	XP_019168410.1	1e-140	PREDICTED: protein NLP9-like
Refseq	XP_019168411.1	1e-140	PREDICTED: protein NLP9-like
TrEMBL	A0A173G8J7	1e-139	A0A173G8J7_PONTR; Transcription factor NLP8
TrEMBL	A0A1S4DCW7	1e-141	A0A1S4DCW7_TOBAC; protein NLP9-like
STRING	XP_009795771.1	1e-139	(Nicotiana sylvestris)