PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8807_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 708aa MW: 78088.8 Da PI: 5.7079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8807_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.8e-29	301	352	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ cra_locus_8807_iso_1_len_3137_ver_3 301 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 352 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.824	291	372	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-26	304	352	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.49E-23	603	691	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.5E-24	606	687	No hit	No description
PROSITE profile	PS51745	22.763	608	690	IPR000270	PB1 domain
SMART	SM00666	1.8E-21	608	690	IPR000270	PB1 domain
CDD	cd06407	6.58E-30	609	689	No hit	No description
Pfam	PF00564	2.9E-17	609	689	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
XIALPVFNGN FDLEMENVCQ ALKAVNLRST APPRLYPECL SNNQRAALAE ITDVLRAVCH 60 AHRLPLALTW IPCIYAEGVG DEVIRVRVRG CTTGSSERCI LCVEDTACYV NDRDMEGFIH 120 ACMEHYLEEG QGIVGKALQS NHPFFFPDVK EYNISEYPLV HHARKFGLNA AVAIRLRSTY 180 TGDDDYILEF FLPISMSGSA EQQLLLNNLS STMQRICRSL RTVSDSELIT GEDSRVEFPD 240 ELNLKGPPVA LSRKLRSNSN IDNEVLMNLS NPENAQMEDK VCPDQIIRGT KRQLEKKRST 300 AEKNVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ 360 SVLDSVQGVE GGLKFDPSTG ELVTTGSITQ DPQIQKGVLP GKNSVGDPIS VIQDIGSTSP 420 AHCMVNENAV VKMEEECYLD NKDVGKLSFP SPNSSKEKYQ QKMPGAEGCP IPELAAPGSV 480 SSRSATLKTM HWSYFDHKSL DSYLSRSGQK EWGLTGKSQN LESCDSVFVS QSSSSVGVID 540 ERDAKEKNSY VLDGDDGVLE QSHPTSSSMT DSSNGSGSMM NGSSSCSRSF AKQKHSKDEA 600 SFEECGSKIT VKASYKDDTV RFKFDPSFGC FNLYEEVARR FKLQQGTFQL KYMDDEEEWV 660 MLVSDSDLQE CLEILDILGT RSVKFLVRDA LCAVGSSGSS NCFLGGGS

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

XIALPVFNGN FDLEMENVCQ ALKAVNLRST APPRLYPECL SNNQRAALAE ITDVLRAVCH  60
AHRLPLALTW IPCIYAEGVG DEVIRVRVRG CTTGSSERCI LCVEDTACYV NDRDMEGFIH  120
ACMEHYLEEG QGIVGKALQS NHPFFFPDVK EYNISEYPLV HHARKFGLNA AVAIRLRSTY  180
TGDDDYILEF FLPISMSGSA EQQLLLNNLS STMQRICRSL RTVSDSELIT GEDSRVEFPD  240
ELNLKGPPVA LSRKLRSNSN IDNEVLMNLS NPENAQMEDK VCPDQIIRGT KRQLEKKRST  300
AEKNVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ  360
SVLDSVQGVE GGLKFDPSTG ELVTTGSITQ DPQIQKGVLP GKNSVGDPIS VIQDIGSTSP  420
AHCMVNENAV VKMEEECYLD NKDVGKLSFP SPNSSKEKYQ QKMPGAEGCP IPELAAPGSV  480
SSRSATLKTM HWSYFDHKSL DSYLSRSGQK EWGLTGKSQN LESCDSVFVS QSSSSVGVID  540
ERDAKEKNSY VLDGDDGVLE QSHPTSSSMT DSSNGSGSMM NGSSSCSRSF AKQKHSKDEA  600
SFEECGSKIT VKASYKDDTV RFKFDPSFGC FNLYEEVARR FKLQQGTFQL KYMDDEEEWV  660
MLVSDSDLQE CLEILDILGT RSVKFLVRDA LCAVGSSGSS NCFLGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795771.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795773.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795774.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795775.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795776.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795777.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795778.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U7XXY1	0.0	A0A1U7XXY1_NICSY; protein NLP9-like
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]