PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_87588_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | YABBY | ||||||||
Protein Properties | Length: 170aa MW: 19304.8 Da PI: 9.7896 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 138.6 | 7e-43 | 29 | 124 | 83 | 170 |
YABBY 83 ksnvekeesastsvssekl.........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdi 147 k ++ + s+s+ +s +k+ ++d+ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+i cra_locus_87588_iso_1_len_507_ver_3 29 KDQEYTCGSSSSARSCNKFtasfdfsadHLHNDQPPPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEI 101 11111111222222222223344444333455566677777.9******************************* PP YABBY 148 shreafsaaaknWahfPkihfgl 170 shreafs+aaknWahfP+ihfgl cra_locus_87588_iso_1_len_507_ver_3 102 SHREAFSTAAKNWAHFPHIHFGL 124 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-40 | 9 | 124 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-8 | 64 | 117 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.1E-5 | 72 | 118 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
XLQHHLQQKM QKQDESNKRE EDGGGSSSKD QEYTCGSSSS ARSCNKFTAS FDFSADHLHN 60 DQPPPRITPI RPPEKRQRVP SAYNRFIKEE IQRIKASNPE ISHREAFSTA AKNWAHFPHI 120 HFGLKLDQAN KQPKLDHPVP PTPPPVPVSV REHAAGPQKS RPSFYEIXIX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027164904.1 | 1e-46 | putative axial regulator YABBY 2 isoform X3 | ||||
Swissprot | Q9XFB0 | 6e-41 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A068V4S5 | 1e-43 | A0A068V4S5_COFCA; Uncharacterized protein | ||||
STRING | XP_006487832.1 | 5e-44 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Publications ? help Back to Top | |||
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