PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8726_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 802aa    MW: 88032.3 Da    PI: 6.1423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8726_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.16.2e-893957563374
                                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknss 75 
                                          ++L+++ e + +g+++ aq +Larl++l sp+ +p+qR+a+yf+eAL+  +++   s +++ l+ s+    +  
  cra_locus_8726_iso_1_len_3237_ver_3 395 DQLFKATELILAGNFSHAQGILARLNHLLSPAVKPFQRAAFYFKEALQLSMLQmPNSAISSGLRISTPF--DGM 466
                                          689*************************************************95566677777777665..799 PP

                                 GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                                           ++ a+k++sevsP+++f ++t Nq +lea++++e +HiiDfdi+ G+QW +++q+L +R++g+ sl+iT+++s
  cra_locus_8726_iso_1_len_3237_ver_3 467 FKMGAYKMLSEVSPLIQFVNFTSNQVLLEALDNAENIHIIDFDIGIGAQWSSFMQELPTRNKGSISLKITAFAS 540
                                          ************************************************************************** PP

                                 GRAS 150 pesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLrvkpgEalaVnlvlqlhrlldesvsle 221
                                          p+++++  ++ ++e L++fA  +gv+fe +v+  ++++  + +++++r + +E++aVn+ +   ++ +++    
  cra_locus_8726_iso_1_len_3237_ver_3 541 PSTHHSFDISLMHESLSQFAIDVGVKFELEVVNFDSFDpsTYSVSSFRSSDNEVIAVNFPI--WSIASRPS--- 609
                                          *******************************97665541156788888888********99..55553344... PP

                                 GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                                             +++L ++k+lsPkv+v+ ++ +++ + + ++++l+a++yy +l+ s++a    ++++ + +E++l+ ++i+
  cra_locus_8726_iso_1_len_3237_ver_3 610 -VLPSLLCFLKQLSPKVMVLLDRGCERFDLPPAHHLLHAIQYYEVLLSSIDAA-NMAADAVNRIEKFLFLPRIE 681
                                          .4456*********************************************666.457788999*********** PP

                                 GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                                          n+v+ + ++     +++ +W + + +aGF++v ls+  ++qa++++++++++g++ve++++slvl+W++r+L+s
  cra_locus_8726_iso_1_len_3237_ver_3 682 NIVSGRLRS----PNQMPTWANLFASAGFSSVMLSNLSEAQAECIMKRTQVRGFHVEKRQASLVLCWQRRELLS 751
                                          ***999888....999********************************************************** PP

                                 GRAS 370 vSaWr 374
                                          +S+Wr
  cra_locus_8726_iso_1_len_3237_ver_3 752 ASVWR 756
                                          ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.766367736IPR005202Transcription factor GRAS
PfamPF035142.1E-86395756IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MQYTSSILSS SPEVKCKKDG SFTGNEPVSV LDTRSPSPST STSTFSSSFG DTNSRGNGEN  60
KTNLEKGNSK GTVLLSGLST AAAATGGGAD GPKKEEWMAE MQDFPSGLDF SQVVQEKFNM  120
GLEDWECLLS EPVVQEQSLF RWISGDSEDS SLNMKQLLQG GNSIEISGNV GYGGINQSSE  180
FETLATIGGD ILTNSNSSAL GISWSGASLA SNNGKLDSAS NSMGLSYSYG NIPNNSFCSP  240
TGLSIQQQQQ VQCVTPEQKP QIFSPQSTMN QLQVQSSPPN LHLLNLPFFG THEDQPQPKR  300
HNPGNGHGHL SSVQQMSKAP NLDPGNEFLL RKQQFPQMQD LQLGFGPQLN MLHSLNPQQK  360
PLVVPKQENI EGNGSPMLSS LHHQQQQQQQ QVVYDQLFKA TELILAGNFS HAQGILARLN  420
HLLSPAVKPF QRAAFYFKEA LQLSMLQMPN SAISSGLRIS TPFDGMFKMG AYKMLSEVSP  480
LIQFVNFTSN QVLLEALDNA ENIHIIDFDI GIGAQWSSFM QELPTRNKGS ISLKITAFAS  540
PSTHHSFDIS LMHESLSQFA IDVGVKFELE VVNFDSFDPS TYSVSSFRSS DNEVIAVNFP  600
IWSIASRPSV LPSLLCFLKQ LSPKVMVLLD RGCERFDLPP AHHLLHAIQY YEVLLSSIDA  660
ANMAADAVNR IEKFLFLPRI ENIVSGRLRS PNQMPTWANL FASAGFSSVM LSNLSEAQAE  720
CIMKRTQVRG FHVEKRQASL VLCWQRRELL SASVWRFXGV INQEEEYSAA QMYAKRCRLM  780
LSFGCQGNKI GATVGTVLLL SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2841275622375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080875.10.0scarecrow-like protein 27
TrEMBLA0A068UNP80.0A0A068UNP8_COFCA; Uncharacterized protein
STRINGXP_009628960.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931