PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_86624_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 138aa MW: 15787 Da PI: 9.9355 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 52.2 | 1.4e-16 | 11 | 100 | 9 | 97 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 +++ a++ ++ e+P rikki+k d++++++s+ea l+s + elfi l+ +s a e+k++t+k + a cra_locus_86624_iso_1_len_438_ver_3 11 EVQIAEETHQPEIPTGRIKKIMKIDKEINRVSSEALYLISCSTELFIQFLAEKSARVALEKKKKTIKLEHLRVA 84 455667778999************************************************************** PP NF-YC 83 vtrtd.ifdflvdivp 97 v+r + + dfl+d p cra_locus_86624_iso_1_len_438_ver_3 85 VKRHQpTSDFLLDSLP 100 *9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.3E-20 | 18 | 86 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.94E-18 | 22 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-19 | 22 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
XLNLAMAENE EVQIAEETHQ PEIPTGRIKK IMKIDKEINR VSSEALYLIS CSTELFIQFL 60 AEKSARVALE KKKKTIKLEH LRVAVKRHQP TSDFLLDSLP VPSQPSDQHP KDRLRLRPEN 120 KPAPAGTRRI DAFFNKCT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027154518.1 | 2e-65 | dr1-associated corepressor | ||||
TrEMBL | A0A068V0C8 | 2e-64 | A0A068V0C8_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400074841 | 2e-58 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11435 | 24 | 25 |