PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8644_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 767aa MW: 87757.2 Da PI: 8.0517

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8644_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.8e-20	51	126	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg+++++ r gC a ++v++ ++g cra_locus_8644_iso_9_len_2888_ver_3 51 EFYNIYATQMGFRIRIGQLYRSRIDGSVVSRRFVCSKEGFQTNS--------------RSGCPAFIRVQRIDSG 110 6*************************************9874..............678********* PP FAR1 75 kwevtkleleHnHela 90 kw+++++++eHnHel+ cra_locus_8644_iso_9_len_2888_ver_3 111 KWVLANIKKEHNHELQ 126 ************97 PP
2	FAR1	63.8	4.7e-20	201	274	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fY++Y++++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+ cra_locus_8644_iso_9_len_2888_ver_3 201 FYCTYSTSLGFRVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGR 260 9***********************************9998..............4899********** PP FAR1 76 wevtkleleHnHel 89 w+v++l++eHnHe+ cra_locus_8644_iso_9_len_2888_ver_3 261 WVVDRLQKEHNHEF 274 **********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-16	51	126	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.2E-15	201	274	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-30	376	467	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.336	653	689	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-7	659	686	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.9E-7	664	691	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015940	Biological Process	pantothenate biosynthetic process
GO:0003864	Molecular Function	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MNREEVGHTM TVRAKPVDVV VAKPNGYWNE GESKLEPQVG LEFDSAEEAQ EFYNIYATQM 60 GFRIRIGQLY RSRIDGSVVS RRFVCSKEGF QTNSRSGCPA FIRVQRIDSG KWVLANIKKE 120 HNHELQHPGE ICPTRITRKA LPTPKSSNIV STRTGIRSQE EDGSSGVFDV KRVKRDNING 180 EHIGEPYKGL EFTSANEAYI FYCTYSTSLG FRVRIGQLFR SKNDGSITSR RFVCSKEGHQ 240 HPSRVGCGAF MRIQRQETGR WVVDRLQKEH NHEFEAPGDA GRRTASASKA FREDVNCGLE 300 NLDLVETNGG LSLVSRCRVS NIGNEWYNVL LEYFQTRQAE DTGFFYAVEM DNGKGMNIFW 360 ADGRSRFCCA QFGDAIVFDT TYRQSSYTVP LASFVGVNHH RQPVLLGCAL VADESEESFT 420 WVFQAWLKAM SGRRPVSIIA DQDKAIQQAI AHVFPGTHHR FSSWQMLAKQ HENLGALLSV 480 DPDFKFEFET CISQSQTASE FDSSWNMLVN KYNLKENSWL KEMYRMRKSW VPLYIKGTFF 540 AGIPVDGSMK SVFGTLLTPQ TPPNEFVVRY ENAVEQRREE ERAEDFNSFN LQAGLHTKDP 600 IEEQCRRLYT STMFKMFQKE LIDCYSYAGI KLNVEGAISR YLVQMCGNAD ERNTVAFNAS 660 NLNISCSCKM FEFEGVLCRH TLKVFQIMNI RELPSRYILH RWTKNAKYGI LRDVDSGGGS 720 QDFKALMLWT LREEARNYIE AGAASLERYK LAFEIMQEGR RNICWQN

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MNREEVGHTM TVRAKPVDVV VAKPNGYWNE GESKLEPQVG LEFDSAEEAQ EFYNIYATQM  60
GFRIRIGQLY RSRIDGSVVS RRFVCSKEGF QTNSRSGCPA FIRVQRIDSG KWVLANIKKE  120
HNHELQHPGE ICPTRITRKA LPTPKSSNIV STRTGIRSQE EDGSSGVFDV KRVKRDNING  180
EHIGEPYKGL EFTSANEAYI FYCTYSTSLG FRVRIGQLFR SKNDGSITSR RFVCSKEGHQ  240
HPSRVGCGAF MRIQRQETGR WVVDRLQKEH NHEFEAPGDA GRRTASASKA FREDVNCGLE  300
NLDLVETNGG LSLVSRCRVS NIGNEWYNVL LEYFQTRQAE DTGFFYAVEM DNGKGMNIFW  360
ADGRSRFCCA QFGDAIVFDT TYRQSSYTVP LASFVGVNHH RQPVLLGCAL VADESEESFT  420
WVFQAWLKAM SGRRPVSIIA DQDKAIQQAI AHVFPGTHHR FSSWQMLAKQ HENLGALLSV  480
DPDFKFEFET CISQSQTASE FDSSWNMLVN KYNLKENSWL KEMYRMRKSW VPLYIKGTFF  540
AGIPVDGSMK SVFGTLLTPQ TPPNEFVVRY ENAVEQRREE ERAEDFNSFN LQAGLHTKDP  600
IEEQCRRLYT STMFKMFQKE LIDCYSYAGI KLNVEGAISR YLVQMCGNAD ERNTVAFNAS  660
NLNISCSCKM FEFEGVLCRH TLKVFQIMNI RELPSRYILH RWTKNAKYGI LRDVDSGGGS  720
QDFKALMLWT LREEARNYIE AGAASLERYK LAFEIMQEGR RNICWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027165372.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_027165373.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_027165374.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_027165375.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]