PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8629_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARR-B
Protein Properties Length: 638aa    MW: 69068.8 Da    PI: 6.7525
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8629_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.8e-28197250155
                              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                          kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  cra_locus_8629_iso_5_len_2757_ver_3 197 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 250
                                          79*******************.********************************8 PP
2Response_reg74.15.4e-25131211109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 
                                          vl+vdD+   +++l+q+l+k  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++l
  cra_locus_8629_iso_5_len_2757_ver_3  13 VLVVDDDIPCLKILEQMLRKCMY-SVTTCSQATVALNLLRERKgfFDIVLSDVHMPDMDGFKLLELVGL-EMDL 84 
                                          89*********************.*****************999********************87754.558* PP

                                          EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                          p+i++++ +  +++ + ++ Ga d+l Kp+  eel +
  cra_locus_8629_iso_5_len_2757_ver_3  85 PVIMMSGDDRTSLVMRGIRHGACDYLIKPIRTEELKN 121
                                          **********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.42E-3410135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-4010147No hitNo description
SMARTSM004484.8E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.93812127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2213121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.93E-2614126No hitNo description
SuperFamilySSF466891.4E-19194254IPR009057Homeodomain-like
PROSITE profilePS5129411.006194253IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-29195255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24197250IPR006447Myb domain, plants
PfamPF002499.1E-7199248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAVSEQFPVG LKVLVVDDDI PCLKILEQML RKCMYSVTTC SQATVALNLL RERKGFFDIV  60
LSDVHMPDMD GFKLLELVGL EMDLPVIMMS GDDRTSLVMR GIRHGACDYL IKPIRTEELK  120
NIWQHVVRKR CTVSKDHENS GSLEDNDRHK HGGDDAEYAS SVNEEADGIL KTLKKRKDSK  180
EEEDTEIEND DPTTAKKPRV VWSVELHQQF VSAVNQLGID KAVPKRILEL MNVPGLTREN  240
VASHLQKFRL YLKRLSGVAQ QQGGLPSSFC GPLEQNSKVG SLGRFDIQAL AVSGQLAPQT  300
LAALHAELLN RPTSNLVLPG IDQPALLQAS VPVSKCITLD QNVAYGQPLM KCPSNISKHF  360
SQTIASAEMV HAGIGSWSSK NLVNVLNCSN VAGLGAQNGN MIMGIMQHQQ QQQRHQQEQH  420
HKQSVVPESV RTINVQPSCL VVPTHSSVNF QVGNGLASVN QNSSFSGSSV IDYSILSPQS  480
NNSSLGTGKV LDVELKPGIM VSGLSGGGSV SPTSMSTDNG VCMPVQNTAS TFVAVRPLPG  540
TVANMSEFHG SYDSTLAKVI GDGPLRSGAF VGRGGTLPSR FAVDEPQLPM MSQGKIFGED  600
SGSKVKQEPS TNFVENAKVG VPMLPRLAPN DLMSVFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23193256164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176KTLKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153447.10.0two-component response regulator ORR21
SwissprotQ8H7S71e-155ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A068V6820.0A0A068V682_COFCA; Uncharacterized protein
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]