PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8629_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 664aa MW: 72053.1 Da PI: 7.1001 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3e-28 | 197 | 250 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl cra_locus_8629_iso_1_len_2740_ver_3 197 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 250 79*******************.********************************8 PP | |||||||
2 | Response_reg | 74 | 5.7e-25 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 vl+vdD+ +++l+q+l+k y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll+ e++l cra_locus_8629_iso_1_len_2740_ver_3 13 VLVVDDDIPCLKILEQMLRKCMY-SVTTCSQATVALNLLRERKgfFDIVLSDVHMPDMDGFKLLELVGL-EMDL 84 89*********************.*****************999********************87754.558* PP EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109 p+i++++ + +++ + ++ Ga d+l Kp+ eel + cra_locus_8629_iso_1_len_2740_ver_3 85 PVIMMSGDDRTSLVMRGIRHGACDYLIKPIRTEELKN 121 **********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 3.7E-34 | 10 | 135 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.8E-40 | 10 | 147 | No hit | No description |
SMART | SM00448 | 4.8E-28 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.938 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.2E-22 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.16E-26 | 14 | 126 | No hit | No description |
PROSITE profile | PS51294 | 11.006 | 194 | 253 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-19 | 194 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 195 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 197 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-7 | 199 | 248 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 664 aa Download sequence Send to blast |
MAVSEQFPVG LKVLVVDDDI PCLKILEQML RKCMYSVTTC SQATVALNLL RERKGFFDIV 60 LSDVHMPDMD GFKLLELVGL EMDLPVIMMS GDDRTSLVMR GIRHGACDYL IKPIRTEELK 120 NIWQHVVRKR CTVSKDHENS GSLEDNDRHK HGGDDAEYAS SVNEEADGIL KTLKKRKDSK 180 EEEDTEIEND DPTTAKKPRV VWSVELHQQF VSAVNQLGID KAVPKRILEL MNVPGLTREN 240 VASHLQKFRL YLKRLSGVAQ QQGGLPSSFC GPLEQNSKVG SLGRFDIQAL AVSGQLAPQT 300 LAALHAELLN RPTSNLVLPG IDQPALLQAS VPVSKCITLD QNVAYGQPLM KCPSNISKHF 360 SQTIASAEMV HAGIGSWSSK NLVNVLNCSN VAGLGAQNGN MIMGIMQHQQ QQQRHQQEQH 420 HKQSVVPESV RTINVQPSCL VVPTHSSVNF QVGNGLASVN QNSSFSGSSV IDYSILSPQS 480 NNSSLGTGKV LDVELKPGIM VSGLSGGGSV SPTSMSTDNG VCMPVQNTAS TFVAVRPLPG 540 TVANMSEFHG SYDSTLAKVI GDGPLRSGAF VGRGGTLPSR FAVDEPQLPM MSQGKIFGED 600 SGSKVKQEPS TNFVENAKVG VPMLPRLAPN DLMNVLRTAE LLGSGWMVVD VRSIIRSFRD 660 SXLK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-23 | 193 | 256 | 1 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 170 | 176 | KTLKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153447.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | A2XE31 | 1e-155 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
Swissprot | Q8H7S7 | 1e-155 | ORR21_ORYSJ; Two-component response regulator ORR21 | ||||
TrEMBL | A0A068V682 | 0.0 | A0A068V682_COFCA; Uncharacterized protein | ||||
STRING | VIT_01s0011g05830.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7749 | 21 | 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|