PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8595_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 697aa MW: 79898.2 Da PI: 7.4564

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8595_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.4e-20	65	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Y++YA+ GFsvrk k+ + + +++ + f Cskeg +++++k+ + ++ +rtgC a++ + ++d++ cra_locus_8595_iso_1_len_2965_ver_3 65 LYCDYAHAKGFSVRKGKNCYFEGTNKLRAKVFLCSKEGVKDDKSKD---RVYRKRDERTGCPAMISFSCDRDNN 135 7******************9****************9999...77788899************* PP FAR1 76 wevtkleleHnHela 90 w+v+k++++HnHe++ cra_locus_8595_iso_1_len_2965_ver_3 136 WKVKKFVKHHNHEMV 150 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-17	65	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-32	273	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	543	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	563	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.6E-5	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MSTTENIQES WGDTIYIGSE DEGGAPENGG AKGVEPNWLF EDGILDYESR LVKQVVSNEF 60 EAYRLYCDYA HAKGFSVRKG KNCYFEGTNK LRAKVFLCSK EGVKDDKSKD RVYRKRDERT 120 GCPAMISFSC DRDNNWKVKK FVKHHNHEMV EPNQRHLLRS VRAVCSATGG SIESHLNAGL 180 VPESTWPHVP GVSASVQNVV NVEPDLNNSK DLLRRSKIEG GDSQAVVNHL KGKANEEGLF 240 YWDVQLDVDG RIANIFWRDG RSRLDYELFG DAITFDTTYR INRYSLACAP FVGVNHHGHN 300 VIFGCGFLSD EKSTTFKWLF KTFLESMGGK QPKTIFSDQD QEIMAAISQV FSNSRHLLCH 360 WHITRNASFH LGSLNSNRGF WALLQKCMHG CQSEEEFEET WVKMMNDFSA TENNWLKDLY 420 KHRRMWGTVF TSDVFYAGLR PTSRSESTNR ALNKNADNTA SLHQFVIFFE NMVKNWRMSE 480 GEEDFRCIQG VPTLAIRTSQ ILKQVAKCYT NRMYKLFENE FTQGVGAADL KTETRCSEAV 540 HQFEVVLHES GKVGIVHFDT TKMDIKCSCK QFETLGILCS HALRIFSLKN IHKIPEKYIL 600 RRWRKDARRR IELPDHAKST KQGSHESEMI YSNWIMRLAY DLVMQSKARV DARVIVEQAF 660 QDAAVKLHEF LSNQTVEVQS SNSCIISNPE DENNEIL

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MSTTENIQES WGDTIYIGSE DEGGAPENGG AKGVEPNWLF EDGILDYESR LVKQVVSNEF  60
EAYRLYCDYA HAKGFSVRKG KNCYFEGTNK LRAKVFLCSK EGVKDDKSKD RVYRKRDERT  120
GCPAMISFSC DRDNNWKVKK FVKHHNHEMV EPNQRHLLRS VRAVCSATGG SIESHLNAGL  180
VPESTWPHVP GVSASVQNVV NVEPDLNNSK DLLRRSKIEG GDSQAVVNHL KGKANEEGLF  240
YWDVQLDVDG RIANIFWRDG RSRLDYELFG DAITFDTTYR INRYSLACAP FVGVNHHGHN  300
VIFGCGFLSD EKSTTFKWLF KTFLESMGGK QPKTIFSDQD QEIMAAISQV FSNSRHLLCH  360
WHITRNASFH LGSLNSNRGF WALLQKCMHG CQSEEEFEET WVKMMNDFSA TENNWLKDLY  420
KHRRMWGTVF TSDVFYAGLR PTSRSESTNR ALNKNADNTA SLHQFVIFFE NMVKNWRMSE  480
GEEDFRCIQG VPTLAIRTSQ ILKQVAKCYT NRMYKLFENE FTQGVGAADL KTETRCSEAV  540
HQFEVVLHES GKVGIVHFDT TKMDIKCSCK QFETLGILCS HALRIFSLKN IHKIPEKYIL  600
RRWRKDARRR IELPDHAKST KQGSHESEMI YSNWIMRLAY DLVMQSKARV DARVIVEQAF  660
QDAAVKLHEF LSNQTVEVQS SNSCIISNPE DENNEIL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13574	3	3