PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8584_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 20193.1 Da PI: 5.2519 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.5e-41 | 9 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 +CaaCk+lrr+C ++C++ pyfp ++p+kfa+vh++FGasn++kll+++p e+r+da++s+vyeA ar+rdPvyG cra_locus_8584_iso_2_len_802_ver_3 9 PCAACKILRRRCDENCIFLPYFPPTEPHKFAAVHRIFGASNITKLLQEIPVEDRDDAVTSMVYEATARLRDPVYG 83 7************************************************************************** PP DUF260 76 avgvilklqqqleqlkaelall 97 +vg+i +lq+++ +l++el+++ cra_locus_8584_iso_2_len_802_ver_3 84 CVGLIASLQKHVFRLQSELNAA 105 ******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.68 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-41 | 9 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASSRNLMPC AACKILRRRC DENCIFLPYF PPTEPHKFAA VHRIFGASNI TKLLQEIPVE 60 DRDDAVTSMV YEATARLRDP VYGCVGLIAS LQKHVFRLQS ELNAALAETM ALRTQLSDAL 120 TIRLTTSPPP RAFSVGSENN FSGLIDHQLV NEFNNCFTNN PFDAMLEESC QASEIVPEIP 180 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-45 | 9 | 110 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-45 | 9 | 110 | 11 | 112 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242472.2 | 1e-64 | LOB domain-containing protein 24-like isoform X2 | ||||
Swissprot | Q8LBW3 | 2e-46 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A3Q7H1C1 | 2e-61 | A0A3Q7H1C1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082770.2.1 | 4e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13147 | 14 | 19 |
Publications ? help Back to Top | |||
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