PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8513_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YA | ||||||||
Protein Properties | Length: 59aa MW: 6977.15 Da PI: 11.2557 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 70 | 5.4e-22 | 18 | 59 | 2 | 44 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRh 44 p+YVN KQ+++Il+RRq+Rakle+++k+ +ksrkpylheSRh cra_locus_8513_iso_3_len_292_ver_3 18 VPVYVNTKQFRAILRRRQMRAKLEAQNKI-AKSRKPYLHESRH 59 59***************************.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.4E-14 | 15 | 59 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 25.744 | 16 | 59 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.1E-18 | 19 | 59 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-14 | 19 | 41 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-14 | 50 | 59 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
MGFNQARVPI PLDCAEDVPV YVNTKQFRAI LRRRQMRAKL EAQNKIAKSR KPYLHESRH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015865962.1 | 9e-25 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_015865980.1 | 9e-25 | nuclear transcription factor Y subunit A-3 | ||||
Refseq | XP_024932654.1 | 9e-25 | nuclear transcription factor Y subunit A-3 | ||||
Swissprot | Q84JP1 | 7e-21 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q9LNP6 | 1e-20 | NFYA8_ARATH; Nuclear transcription factor Y subunit A-8 | ||||
TrEMBL | A0A1U7XW64 | 2e-23 | A0A1U7XW64_NICSY; nuclear transcription factor Y subunit A-4-like isoform X2 | ||||
TrEMBL | M0ZH83 | 3e-24 | M0ZH83_SOLTU; Uncharacterized protein | ||||
STRING | XP_009793846.1 | 4e-24 | (Nicotiana sylvestris) | ||||
STRING | XP_009801470.1 | 4e-24 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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