PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8503_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 22518.3 Da PI: 5.4379 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.2 | 8.3e-15 | 25 | 103 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + l +p f++++g k ++ + l+ ++g sW+++l +++r++l+kGWkeF++ ++++ f+vFk+ g+s cra_locus_8503_iso_2_len_727_ver_3 25 QGLKIPVAFMTKYGRKLKG--SVLLKVPNGGSWRIEL--AHHGERTLLQKGWKEFADFYSIETRFFLVFKYLGNS 95 5689*********877444..6***************..*********************************987 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + +v +f+ cra_locus_8503_iso_2_len_727_ver_3 96 QL--RVLIFD 103 77..888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.097 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.49E-21 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-22 | 13 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-14 | 14 | 103 | No hit | No description |
SMART | SM01019 | 1.7E-12 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-12 | 24 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
XAAKKPKGEE ESVHFYKVVM FPSDQGLKIP VAFMTKYGRK LKGSVLLKVP NGGSWRIELA 60 HHGERTLLQK GWKEFADFYS IETRFFLVFK YLGNSQLRVL IFDINGVEIE YPSHENSSSE 120 EESEIILSNE DEEISVEILQ SYPRNRASKR AKCVEEDDSV QILDDLAEGE PNGLPIKQNQ 180 TEELDCSRQK MKKSGKL |