PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8503_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | B3 | ||||||||
Protein Properties | Length: 320aa MW: 36477.7 Da PI: 9.2949 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.8 | 2.3e-14 | 25 | 103 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + l +p f++++g k ++ + l+ ++g sW+++l +++r++l+kGWkeF++ ++++ f+vFk+ g+s cra_locus_8503_iso_1_len_974_ver_3 25 QGLKIPVAFMTKYGRKLKG--SVLLKVPNGGSWRIEL--AHHGERTLLQKGWKEFADFYSIETRFFLVFKYLGNS 95 5689*********877444..6***************..*********************************987 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + +v +f+ cra_locus_8503_iso_1_len_974_ver_3 96 QL--RVLIFD 103 77..888876 PP | |||||||
2 | B3 | 48 | 2.3e-15 | 241 | 316 | 17 | 94 |
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +p++f +++++ k ++ +l l s ++W v l +++r +++ GWkeFvk+n Lk+gD++vF+l++ ++ cra_locus_8503_iso_1_len_974_ver_3 241 DIPRNFEAQYMK-KMKGLELNLDVaGSKKTWPVIL-LMYSPKRALFGVGWKEFVKENALKVGDVCVFELVKAaRK 313 49****989964.467889999985667*******.67788889*************************987666 PP E..EE CS B3 90 felvv 94 f +v cra_locus_8503_iso_1_len_974_ver_3 314 F--NV 316 6..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.097 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.63E-20 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-21 | 13 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.55E-13 | 14 | 103 | No hit | No description |
SMART | SM01019 | 1.7E-12 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-12 | 24 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-18 | 222 | 319 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-18 | 223 | 319 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.73E-18 | 228 | 319 | No hit | No description |
SMART | SM01019 | 3.5E-10 | 229 | 317 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-13 | 242 | 316 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 242 | 320 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
XAAKKPKGEE ESVHFYKVVM FPSDQGLKIP VAFMTKYGRK LKGSVLLKVP NGGSWRIELA 60 HHGERTLLQK GWKEFADFYS IETRFFLVFK YLGNSQLRVL IFDINGVEIE YPSHENSSSE 120 EESEIILSNE DEEISVEILQ SYPRNRASKR AKCVEEDDSV QILDDLAEGE PNGLPIKQNQ 180 TEELDCSRQK MKKNGKSMGI SIGNNATEMV KEKSKSYKKA KAFRSSNPFF IYLVQPSSVS 240 DIPRNFEAQY MKKMKGLELN LDVAGSKKTW PVILLMYSPK RALFGVGWKE FVKENALKVG 300 DVCVFELVKA ARKFNVIIYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-13 | 207 | 310 | 26 | 130 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-13 | 207 | 310 | 26 | 130 | B3 domain-containing transcription factor VRN1 |