PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8501_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30542.5 Da    PI: 9.8174
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8501_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-2956106151
                                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                          k+ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++s t k++ey s
  cra_locus_8501_iso_2_len_1013_ver_3  56 KKIENSTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMLSGTKKFHEYTS 106
                                          68***********************************************75 PP
2K-box867.7e-29118214197
                                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                                          yq++ g +l+++++e++q++l++Lk+ +++L+r +R+++G+dL++L++k+L +L++++ ++l+ iR++K+++++
  cra_locus_8501_iso_2_len_1013_ver_3 118 YQATVGADLWNTHYEKMQENLRRLKDINNKLRRDIRQRMGQDLNDLDIKQLCNLQEKMVDALTIIRERKYHVIK 191
                                          77888999****************************************************************** PP

                                K-box  75 eqieelqkkekelqeenkaLrkk 97 
                                          +q+++ +kk ++l+e++ +L   
  cra_locus_8501_iso_2_len_1013_ver_3 192 TQTDTFRKKVRNLEERHGNLLFD 214
                                          *****************999755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.53948108IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-3848107IPR002100Transcription factor, MADS-box
CDDcd002654.03E-3949127No hitNo description
SuperFamilySSF554554.71E-3649142IPR002100Transcription factor, MADS-box
PROSITE patternPS00350050104IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-265070IPR002100Transcription factor, MADS-box
PfamPF003192.5E-2357104IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-267085IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-2685106IPR002100Transcription factor, MADS-box
PfamPF014863.6E-19129213IPR002487Transcription factor, K-box
PROSITE profilePS5129715.049131221IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
XKGLLSLNPF PVSTSDIIPP NPYXPKLSLV DFPVADPSID RVSEEGIMGR GRIEIKKIEN  60
STNRQVTYSK RRNGIFKKAH ELSVLCDAKV SLIMLSGTKK FHEYTSPSTT TKTIIDQYQA  120
TVGADLWNTH YEKMQENLRR LKDINNKLRR DIRQRMGQDL NDLDIKQLCN LQEKMVDALT  180
IIRERKYHVI KTQTDTFRKK VRNLEERHGN LLFDIEAKCE DPKYGIVENA YNNSSTVALV  240
DGVASNLYAF SLQPRHPNLH HGLRLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-1448106159MEF2C
5f28_B2e-1448106159MEF2C
5f28_C2e-1448106159MEF2C
5f28_D2e-1448106159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073264.11e-121floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-112TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLG3EIV81e-130G3EIV8_9GENT; MADS box transcription factor (Fragment)
STRINGPGSC0003DMT4000091121e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]