PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8500_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YC

Protein Properties

Length: 275aa MW: 30423.3 Da PI: 5.2869

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8500_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.9	9.7e-56	81	185	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr 71 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaP++++kace+fileltlrsw+h+eenkr cra_locus_8500_iso_4_len_1302_ver_3 81 QLQAFWANQvqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFAKACEMFILELTLRSWIHTEENKR 154 89****99999********************************************************* PP NF-YC 72 rtlkksdiaaavtrtdifdflvdivprdelk 102 rtl+k+diaaa++rtd+fdflvdi+prdelk cra_locus_8500_iso_4_len_1302_ver_3 155 RTLQKNDIAAAISRTDVFDFLVDIIPRDELK 185 **************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.51E-33	63	175	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.9E-37	95	167	IPR009072	Histone-fold
Pfam	PF00808	3.7E-21	103	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDQSDRTQQQ QQQQQQLVGA VTSGTAVSYT NSPYQNAGMM VTGTPAAAVS SPTQPQTGFP 60 ASQHQLAYPQ AQHFHSQQQQ QLQAFWANQV QEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPIVF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP 180 RDELKEEGLG VTKATIPLVG SPADSIPPYY YVPPPPPPPP QHPVGPTGMI MGKPIDQAAL 240 YAGQQLRAPP SFMPWPSQSQ TQPPPPESQT QESET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-59	89	181	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592144.1	1e-125	nuclear transcription factor Y subunit C-2-like
TrEMBL	A0A2C9UIQ9	1e-123	A0A2C9UIQ9_MANES; Uncharacterized protein
STRING	cassava4.1_014024m	1e-124	(Manihot esculenta)