PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_84673_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 28203.1 Da PI: 9.4085 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51 | 3.9e-16 | 144 | 234 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegek 69 +W+++ +++Li+a + +l+rg+l++++W+ev++++ ++++++r+ +qCk++++ l+k+yk +k + cra_locus_84673_iso_1_len_774_ver_3 144 CWSEEATRTLIDAWGSHYLELNRGNLRQKHWQEVADAVnalhaHSKKLQRTDIQCKNRIDTLKKKYKVEKSKFI 217 7*****************************************99**************************9999 PP trihelix 70 krtsessstcpyfdqle 86 + + + +s +p+f +l+ cra_locus_84673_iso_1_len_774_ver_3 218 ESNGRYVSPWPFFPSLD 234 99899999******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01217 | 3.3E-10 | 10 | 22 | No hit | No description |
PRINTS | PR01217 | 3.3E-10 | 51 | 63 | No hit | No description |
PRINTS | PR01217 | 3.3E-10 | 92 | 113 | No hit | No description |
PRINTS | PR01217 | 3.3E-10 | 120 | 136 | No hit | No description |
Pfam | PF13837 | 8.6E-26 | 142 | 236 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 142 | 208 | IPR009057 | Homeodomain-like |
PRINTS | PR01217 | 3.3E-10 | 244 | 256 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
XTAQTNTNWS SPTYDPIPVA LPTYTFSSFP HLLRRSASLS ISMPGRPASA SPPPSHSPNP 60 NSLSVTSSSS TSTSTSSHRS TADSTLMSDE DEAAPPPGST SDNPTSTATP SPPPRTITEL 120 APLPPPPLSS TTTRTPSFPV REDCWSEEAT RTLIDAWGSH YLELNRGNLR QKHWQEVADA 180 VNALHAHSKK LQRTDIQCKN RIDTLKKKYK VEKSKFIESN GRYVSPWPFF PSLDSLIGDN 240 FIKNAPTSPS PPPPKKNLA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016541575.1 | 1e-65 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A1U8EE29 | 3e-64 | A0A1U8EE29_CAPAN; LOW QUALITY PROTEIN: trihelix transcription factor ASIL1-like | ||||
STRING | XP_009760894.1 | 1e-61 | (Nicotiana sylvestris) | ||||
STRING | XP_009614096.1 | 6e-62 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |