PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8413_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 272aa MW: 31035.4 Da PI: 7.2361

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8413_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.8	4.5e-29	106	193	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gk cra_locus_8413_iso_3_len_1793_ver_3 106 FYNAYATKVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGK 177 ****************************************9988..9********************* PP FAR1 76 wevtkleleHnHelap 91 w+vtk+++eH+H+l+p cra_locus_8413_iso_3_len_1793_ver_3 178 WVVTKFVKEHTHPLTP 193 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-26	106	193	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEVYYYSXCN QNTFYLSVDF DIDGDVNGEV VGSSIDIEGR TDDEDAIAGT SVDGALKQGL 60 HIKIDEDLSR TQIVPLEEPQ TVNNSASNDE PYVGQEFESE AAAHAFYNAY ATKVGFVIRV 120 SKLSRSRRDG SAIGRALVCN KEGFRMPDKR EKIVRQRAET RVGCRAMILV RKVSSGKWVV 180 TKFVKEHTHP LTPGKGRKDL IYDQYPNEHD KIRELTQQLA VEKKRAATYK RHLEMIFEHI 240 EEHNQSLSKK IQNIVNNVRE MESKELQSRR XC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119573.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156270.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156292.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_027156293.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A068V8N6	1e-154	A0A068V8N6_COFCA; Uncharacterized protein
STRING	XP_010097543.1	1e-140	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25