PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8413_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 28941.4 Da PI: 7.664 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.9 | 3.9e-29 | 89 | 176 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gk cra_locus_8413_iso_2_len_1836_ver_3 89 FYNAYATKVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGK 160 ******************************************9988..9************************* PP FAR1 76 wevtkleleHnHelap 91 w+vtk+++eH+H+l+p cra_locus_8413_iso_2_len_1836_ver_3 161 WVVTKFVKEHTHPLTP 176 *************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-26 | 89 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDFDIDGDVN GEVVGSSIDI EGRTDDEDAI AGTSVDGALK QGLHIKIDED LSRTQIVPLE 60 EPQTVNNSAS NDEPYVGQEF ESEAAAHAFY NAYATKVGFV IRVSKLSRSR RDGSAIGRAL 120 VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKVSSGK WVVTKFVKEH THPLTPGKGR 180 KDLIYDQYPN EHDKIRELTQ QLAVEKKRAA TYKRHLEMIF EHIEEHNQSL SKKIQNIVNN 240 VREMESKELQ SRRXC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027119573.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027156270.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027156292.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027156293.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A068V8N6 | 1e-155 | A0A068V8N6_COFCA; Uncharacterized protein | ||||
STRING | Migut.H01929.1.p | 1e-139 | (Erythranthe guttata) |