PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8413_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 209aa MW: 24183.3 Da PI: 9.9943 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.6 | 2.5e-29 | 43 | 130 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gk cra_locus_8413_iso_1_len_1854_ver_3 43 FYNAYATKVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGK 114 ******************************************9988..9************************* PP FAR1 76 wevtkleleHnHelap 91 w+vtk+++eH+H+l+p cra_locus_8413_iso_1_len_1854_ver_3 115 WVVTKFVKEHTHPLTP 130 *************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-26 | 43 | 130 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
IDEDLSRTQI VPLEEPQTVN NSASNDEPYV GQEFESEAAA HAFYNAYATK VGFVIRVSKL 60 SRSRRDGSAI GRALVCNKEG FRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF 120 VKEHTHPLTP GKGRKDLIYD QYPNEHDKIR ELTQQLAVEK KRAATYKRHL EMIFEHIEEH 180 NQSLSKKIQN IVNNVREMES KELQSRRXC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027119573.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027156270.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027156292.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_027156293.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 5e-26 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S4AQF2 | 1e-133 | A0A1S4AQF2_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
STRING | XP_009605656.1 | 1e-133 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
---|---|---|---|
|