PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8404_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 393aa MW: 43059.6 Da PI: 6.5831

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8404_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.3e-10	190	246	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s cra_locus_8404_iso_2_len_1629_ver_3 190 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 246 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-16	186	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	188	251	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-8	190	245	No hit	No description
SuperFamily	SSF57959	8.44E-11	190	241	No hit	No description
Pfam	PF00170	5.9E-9	190	247	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.14E-23	191	240	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
LKHFFIRFSS DSGIAVLRIY WEIQFPIRKE EMQDPNGKQQ AASFALRPSH HRRAHSEVNF 60 RLPEDLDLVS DPFDAPVGSS FEELGSEDDL FSTYMDIEKL GGSNSNSNVN EGVSSDNAGG 120 GAAGGGSGGI GRGSDGEKSL TATTPMGGRP RHRYSNSMDS SGLLLGESSI EAKKAMAPDK 180 LAELWTIDPK RAKRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD 240 TTGLSSENTE LKLRLQAMEQ QAQLRDALNE ALKQEVERLR IATGEMASPS DAYNLGMQHV 300 PYNQSAFFAH QHQSGANDSP NTRMPQYNNL QQPGMPNHHH QMLSANHVQG FSDAMQQDPL 360 GRFQGLDIGS SRGSHLGKPE GPSISASESS STF

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

LKHFFIRFSS DSGIAVLRIY WEIQFPIRKE EMQDPNGKQQ AASFALRPSH HRRAHSEVNF  60
RLPEDLDLVS DPFDAPVGSS FEELGSEDDL FSTYMDIEKL GGSNSNSNVN EGVSSDNAGG  120
GAAGGGSGGI GRGSDGEKSL TATTPMGGRP RHRYSNSMDS SGLLLGESSI EAKKAMAPDK  180
LAELWTIDPK RAKRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD  240
TTGLSSENTE LKLRLQAMEQ QAQLRDALNE ALKQEVERLR IATGEMASPS DAYNLGMQHV  300
PYNQSAFFAH QHQSGANDSP NTRMPQYNNL QQPGMPNHHH QMLSANHVQG FSDAMQQDPL  360
GRFQGLDIGS SRGSHLGKPE GPSISASESS STF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076587.1	1e-164	transcription factor RF2b
Swissprot	O22873	1e-111	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A068UZE2	1e-161	A0A068UZE2_COFCA; Uncharacterized protein
TrEMBL	A0A3Q7GV72	1e-162	A0A3Q7GV72_SOLLC; Uncharacterized protein
STRING	Solyc06g049040.2.1	1e-154	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]