PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_82942_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 184aa    MW: 21697.5 Da    PI: 7.5027
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_82942_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.7e-30151151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krie++snrqvt+skRrngi+KKA+E+SvLCda v+viif+++gk++e+++
  cra_locus_82942_iso_1_len_550_ver_3  1 KRIESSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFATSGKMHEFCT 51
                                         79***********************************************96 PP
2K-box78.41.9e-2663159197
                                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                                          y+k sgk+l+++k+e+l++e++++kke++++q e+Rh++Ged+++L++keL+ Le++Le++l+  R+k++++++
  cra_locus_82942_iso_1_len_550_ver_3  63 YHKLSGKRLWDSKHENLDNEINRIKKENDSMQIELRHMKGEDITTLTYKELMLLEEALETGLSALRTKQMDVVR 136
                                          7899********************************************************************** PP

                                K-box  75 eqieelqkkekelqeenkaLrkk 97 
                                           + ++  ++e+e+q  + +Lr++
  cra_locus_82942_iso_1_len_550_ver_3 137 IMRKHNEMMEEENQGLQFKLRQM 159
                                          *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.23E-30188IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-27152IPR002100Transcription factor, MADS-box
CDDcd002659.16E-34172No hitNo description
PROSITE profilePS5006626.408153IPR002100Transcription factor, MADS-box
PfamPF003192.0E-23249IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-141530IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-143051IPR002100Transcription factor, MADS-box
PfamPF014868.2E-1674156IPR002487Transcription factor, K-box
PROSITE profilePS5129713.35376162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
KRIESSSNRQ VTYSKRRNGI MKKAKEISVL CDAHVSVIIF ATSGKMHEFC TPSTSLVDML  60
DQYHKLSGKR LWDSKHENLD NEINRIKKEN DSMQIELRHM KGEDITTLTY KELMLLEEAL  120
ETGLSALRTK QMDVVRIMRK HNEMMEEENQ GLQFKLRQMQ LDSIEDNVME NQGVYHHHHH  180
HHHX
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081947.11e-109floral homeotic protein GLOBOSA
SwissprotQ033781e-112GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLG3EIV71e-119G3EIV7_DIGPU; MADS box transcription factor (Fragment)
STRINGMigut.A00326.1.p1e-107(Erythranthe guttata)
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]