PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8285_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 312aa MW: 34521.1 Da PI: 7.7138 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.8 | 9.7e-16 | 210 | 246 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ cra_locus_8285_iso_5_len_1764_ver_3 210 CNHCGVSEneTPAMRRGPAGPRTLCNACGLMWANKGT 246 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.432 | 74 | 109 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-8 | 74 | 109 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-11 | 77 | 108 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.4E-15 | 143 | 185 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.106 | 143 | 185 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 1.71E-11 | 202 | 254 | No hit | No description |
SMART | SM00401 | 3.2E-11 | 204 | 257 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 7.31E-15 | 209 | 256 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 209 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-13 | 210 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 210 | 237 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MESLNVRPFQ PMRFHEENAN WPIRVDEDGG GFGGLDVTGG GADEPISGGG EDVHAVSSVP 60 MSNSVNFTSG ASSVASRTSE LTISFEGEVY VFPAVTPEKV QAVLLLLGGR DKPSSSVSAT 120 GFLLQQNIKV LDDDSGKPSV SRRIASLLRF REKRKERCFE KKIRYTCRKE VAQRMHRKNG 180 QFASSKETVE TTDKNLYHGT RAEGHVLQRC NHCGVSENET PAMRRGPAGP RTLCNACGLM 240 WANKGTLRDL SKGAKPSPFD QSELDMSDIK SCMMETENSY HNQNEEVIRF CMTVMMVRFC 300 NSVVEIKNML LI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106172.1 | 1e-115 | GATA transcription factor 19-like isoform X1 | ||||
Refseq | XP_027106173.1 | 1e-115 | GATA transcription factor 19-like isoform X2 | ||||
Refseq | XP_027158765.1 | 1e-115 | GATA transcription factor 19-like isoform X1 | ||||
Swissprot | Q8GXL7 | 2e-60 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A068TMB9 | 1e-114 | A0A068TMB9_COFCA; Uncharacterized protein | ||||
STRING | XP_009776483.1 | 2e-97 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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