PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8195_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 671aa MW: 78012.5 Da PI: 6.3364

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8195_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.8	7.3e-23	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 fYn YAk+ GF vr+s++ ++ +++e +++++ Cs g++++++ + r+r+etrtgC a++k +++++++ cra_locus_8195_iso_2_len_2229_ver_3 60 FYNCYAKQQGFGVRVSNTWYR-KSRERYRAKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKR 127 9*************99997.66679**********99888.....******************* PP FAR1 76 wevtkleleHnHela 90 w+++++eleHnH ++ cra_locus_8195_iso_2_len_2229_ver_3 128 WRIIEVELEHNHLIS 142 **********876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-20	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-20	264	352	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.198	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.2E-5	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MDEVSLNSEP VYDDEAEEFE IDGDCAMTEF IGQSGVLQGE NPLPPAVGME FETYEDVYYF 60 YNCYAKQQGF GVRVSNTWYR KSRERYRAKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMENKRWRI IEVELEHNHL ISPSGGKSYK SHRKLGPGSK RCLQIDCPEE VQKIRLFRTV 180 IIDEEDSGKL IHEEDEFGNK DDQFNNQLKL SRGDSQAMHK FFTTMQLMNP NFFYVMDLNE 240 KGCLRNVFWA DAKSRAAYGY FGDVITIDTS CLIRKHQVPL VVLVGLNHHG QPFPLGCGLV 300 AGESVESYVW VFRAWLTYMV GRSPQAIISE QHKSLQTALG EVFPRASHFL SLTSILEKLP 360 EELGSLQEYE AIKVSFIRSV CDSLRVDEFE AGWEDMMNQH AISYHKWLQT LYKDRKRWVP 420 AYTKETFLAG MFPINENERV ISPFDGYLSK CTTLKDFLDN YDKFLEDINQ REALANMESR 480 NLNGLLKTTF YYELQLSKLY TNNIFIKFQE QVQGMYSCFS TRQICIDGSV ISYLVKEHTE 540 AVNNHRRETK DYEVMYNTAD AEIICVCGMF NLKGYLCRHS LCVLKQNGLE EIPSQYILSR 600 WRKDVHRSYV FDQSFNDIDI NNPVHRYDNL YKCILNVVEQ GRKSHDRYAF TLQALDEIMN 660 KFRLEKSDQS S

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MDEVSLNSEP VYDDEAEEFE IDGDCAMTEF IGQSGVLQGE NPLPPAVGME FETYEDVYYF  60
YNCYAKQQGF GVRVSNTWYR KSRERYRAKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENKRWRI IEVELEHNHL ISPSGGKSYK SHRKLGPGSK RCLQIDCPEE VQKIRLFRTV  180
IIDEEDSGKL IHEEDEFGNK DDQFNNQLKL SRGDSQAMHK FFTTMQLMNP NFFYVMDLNE  240
KGCLRNVFWA DAKSRAAYGY FGDVITIDTS CLIRKHQVPL VVLVGLNHHG QPFPLGCGLV  300
AGESVESYVW VFRAWLTYMV GRSPQAIISE QHKSLQTALG EVFPRASHFL SLTSILEKLP  360
EELGSLQEYE AIKVSFIRSV CDSLRVDEFE AGWEDMMNQH AISYHKWLQT LYKDRKRWVP  420
AYTKETFLAG MFPINENERV ISPFDGYLSK CTTLKDFLDN YDKFLEDINQ REALANMESR  480
NLNGLLKTTF YYELQLSKLY TNNIFIKFQE QVQGMYSCFS TRQICIDGSV ISYLVKEHTE  540
AVNNHRRETK DYEVMYNTAD AEIICVCGMF NLKGYLCRHS LCVLKQNGLE EIPSQYILSR  600
WRKDVHRSYV FDQSFNDIDI NNPVHRYDNL YKCILNVVEQ GRKSHDRYAF TLQALDEIMN  660
KFRLEKSDQS S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027125469.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027125470.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027125471.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027168848.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_027168849.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2R6QFW7	0.0	A0A2R6QFW7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_009771778.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70