PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8171_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 673aa MW: 73729.4 Da PI: 6.6941 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.9 | 1.2e-15 | 474 | 520 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq cra_locus_8171_iso_8_len_3208_ver_3 474 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 520 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-20 | 468 | 537 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 470 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.97E-17 | 473 | 524 | No hit | No description |
Pfam | PF00010 | 4.3E-13 | 474 | 520 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-20 | 474 | 528 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 476 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MNHHCVPDFD MDDDYSIPTT SSSSLNRSKK TPMGDEDIME LLWQDGQVVV QSQNQRSFKK 60 SPVGGSEGEI PTQQQSSAAG GTRDIRSVET DAMAHQQQQQ QQQLFMHEDE MASWLHYPID 120 DSSFDRDIYS DLLYPPLSTS ISSTTTTTAT IPGTNLPPRE IRTTTTEIRP LPPPPPSAPV 180 PPAPRPPVPL PPKCTAIETP AKIQNFMHFS RLPKTRIEPG PSSSSKAAKE LTVVESNDSP 240 RAEPESRVSQ AADSAVHVSG GNVGCGTVSV TAAAAGTSTA GREFATPCDL TVTSSPGGSG 300 DSFTASVEPH PIQKPTRSPP RTANAREENP TMPNVTVRQA IKLSFIGLDH KLVEALQTIS 360 TPIWLGPLVQ GKNFFFSPFP SSFSSLLKFR ILNPEEFCYH CKEVXWXEMA RLIDKLPIIS 420 CRTILSFLAL AMLICCVNTC LNLSSLQDIE IESTGGKKQP RGSTSTKRSR AAEVHNLSER 480 RRRDRINEKM RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMIPMMYPGV 540 QQYIPAMGMG MDMGMNRPMM PYPALMPTSG MPIPPAANMG PIYPVPAYHM QPVPVPDPSR 600 LQAAGQSDPM LSSMIPNIPN QPRMPNYSDP YQQYMGLHQA QMPIPQTQVA PQPPSNKPSS 660 SRNVANPENQ DTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 478 | 483 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027163807.1 | 1e-103 | transcription factor PIF1 | ||||
TrEMBL | A0A0P0C6U2 | 1e-174 | A0A0P0C6U2_CATRO; Phytochrome interacting factor 1 | ||||
STRING | Solyc09g063010.2.1 | 3e-91 | (Solanum lycopersicum) |