PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8171_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 564aa MW: 61435.1 Da PI: 6.1065 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.2 | 9.6e-16 | 365 | 411 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq cra_locus_8171_iso_6_len_2894_ver_3 365 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 411 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-20 | 359 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 361 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.80E-17 | 364 | 415 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-20 | 365 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-13 | 365 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 367 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MNHHCVPDFD MDDDYSIPTT SSSSLNRSKK TPMGDEDIME LLWQDGQVVV QSQNQRSFKK 60 SPVGGSEGEI PTQQQSSAAG GTRDIRSVET DAMAHQQQQQ QQQLFMHEDE MASWLHYPID 120 DSSFDRDIYS DLLYPPLSTS ISSTTTTTAT IPGTNLPPRE IRTTTTEIRP LPPPPPSAPV 180 PPAPRPPVPL PPKCTAIETP AKIQNFMHFS RLPKTRIEPG PSSSSKAAKE LTVVESNDSP 240 RAEPESRVSQ AADSAVHVSG GNVGCGTVSV TAAAAGTSTA GREFATPCDL TVTSSPGGSG 300 DSFTASVEPH PIQKPTRSTA ENRKRKGREP DDAECHSEDI EIESTGGKKQ PRGSTSTKRS 360 RAAEVHNLSE RRRRDRINEK MRALQELIPR CNKSDKASML DEAIEYLKSL QLQVQMMSMG 420 CGMIPMMYPG VQQYIPAMGM GMDMGMNRPM MPYPALMPTS GMPIPPAANM GPIYPVPAYH 480 MQPVPVPDPS RLQAAGQSDP MLSSMIPNIP NQPRMPNYSD PYQQYMGLHQ AQMPIPQTQV 540 APQPPSNKPS SSRNVANPEN QDTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 369 | 374 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027163807.1 | 0.0 | transcription factor PIF1 | ||||
TrEMBL | A0A0P0C6U2 | 0.0 | A0A0P0C6U2_CATRO; Phytochrome interacting factor 1 | ||||
STRING | XP_009591396.1 | 0.0 | (Nicotiana tomentosiformis) |